LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP11-127B20.2
hsa-miR-19b-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610058
Biotype: lincRNA
Gene id: ENSG00000273156
Gene Name: RP11-127B20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-104
0.076
8
XLOC_008106
hsa-miR-19b-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
988-993
0.030
1
7mer
1704-1720
0.028
1
6mer
1511-1537
0.018
1
MIR490
hsa-miR-19b-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608269
Biotype: antisense
Gene id: ENSG00000234352
Gene Name: MIR490
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1434-1452
0.056
2
7mer
1716-1743
0.013
1
6mer
515-535
0.005
1
RP11-394I13.1
hsa-miR-19b-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000563759
Biotype: lincRNA
Gene id: ENSG00000260868
Gene Name: RP11-394I13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-37
0.032
4
7mer
57-76
0.031
6
6mer
319-333
0.004
2
6mer
1147-1173
0.002
0
6mer
980-1006
0.002
0
ITPK1-AS1
hsa-miR-19b-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553639
Biotype: antisense
Gene id: ENSG00000258730
Gene Name: ITPK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4020-4034
0.065
3
6mer
45-70
0.004
Not Conserved
6mer
1379-1387
0.001
Not Conserved
LOC100506730
hsa-miR-19b-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037847.1
Biotype: lincRNA
Gene id: NR_037847.1 (gene)
Gene Name: LOC100506730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1424-1443
0.041
1
7mer
2100-2105
0.020
1
7mer
1383-1404
0.008
1
LINC01011
hsa-miR-19b-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450238
Biotype: lincRNA
Gene id: ENSG00000244041
Gene Name: LINC01011
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
858-876
0.070
2
LINC00483
hsa-miR-19b-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000502517
Biotype: lincRNA
Gene id: ENSG00000167117
Gene Name: LINC00483
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
382-408
0.067
5
6mer
771-787
0.003
1
LOC101928882
hsa-miR-19b-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_109986.1
Biotype: sense
Gene id: NR_109986.1 (gene)
Gene Name: LOC101928882
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
377-403
0.069
5
XLOC_009017
hsa-miR-19b-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019182
Biotype: transcript isomorph
Gene id: XLOC_009017
Gene Name: XLOC_009017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1292-1304
0.008
0
6mer
1155-1182
0.007
0
6mer
1110-1123
0.006
0
6mer
73-84
0.005
Not Conserved
6mer
24-35
0.004
Not Conserved
6mer
1332-1344
0.004
Not Conserved
6mer
153-163
0.004
Not Conserved
6mer
207-220
0.003
Not Conserved
6mer
921-925
0.003
Not Conserved
6mer
355-368
0.003
Not Conserved
6mer
235-248
0.003
Not Conserved
6mer
394-398
0.002
Not Conserved
6mer
446-459
0.002
Not Conserved
6mer
280-294
0.002
Not Conserved
6mer
505-518
0.002
Not Conserved
6mer
610-621
0.002
Not Conserved
6mer
960-964
0.002
Not Conserved
6mer
694-704
0.002
Not Conserved
6mer
789-806
0.002
Not Conserved
6mer
706-719
0.001
Not Conserved
LINC01531
hsa-miR-19b-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600405
Biotype: lincRNA
Gene id: ENSG00000205786
Gene Name: LINC01531
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
643-653
0.069
1
RP11-231E19.1
hsa-miR-19b-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
974-995
0.055
1
7mer
2490-2505
0.009
1
6mer
697-701
0.004
1
XLOC_013274
hsa-miR-19b-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1724-1749
0.051
1
6mer
4401-4405
0.006
1
6mer
2283-2308
0.005
1
6mer
1946-1966
0.005
1
AC159540.1
hsa-miR-19b-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609751
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-462
0.066
1
RP3-395M20.8
hsa-miR-19b-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432521
Biotype: lincRNA
Gene id: ENSG00000238164
Gene Name: RP3-395M20.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
45-59
0.048
1
7mer
262-289
0.006
0
6mer
138-151
0.005
2
6mer
2326-2347
0.002
1
6mer
1379-1398
0.002
1
6mer
1941-1960
0.001
1
FAM201A
hsa-miR-19b-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027294.1
Biotype: lincRNA
Gene id: NR_027294.1 (gene)
Gene Name: FAM201A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1631-1650
0.053
1
6mer
210-237
0.011
1
APCDD1L-AS1
hsa-miR-19b-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000427140
Biotype: lincRNA
Gene id: ENSG00000231290
Gene Name: APCDD1L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1904-1925
0.042
Not Conserved
8mer
669-695
0.022
3
H19
hsa-miR-19b-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000431095
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-265
0.048
4
8mer
230-249
0.016
1
SNHG14
hsa-miR-19b-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546682
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3717-3743
0.021
1
8mer
6962-6973
0.019
1
7mer
5060-5073
0.010
3
8mer
6745-6766
0.010
1
6mer
641-659
0.003
1
6mer
6297-6313
0.001
1
H19
hsa-miR-19b-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000411754
Biotype: lincRNA
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-265
0.048
4
8mer
230-249
0.016
1
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