LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
MIR6818
hsa-miR-19b-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
43960-43974
0.017
2
9mer
12739-12756
0.015
2
7mer
37626-37637
0.011
12
7mer
22952-22969
0.007
1
6mer
48607-48616
0.006
7
7mer
19537-19555
0.005
1
7mer
41491-41514
0.005
7
7mer
9004-9029
0.003
1
6mer
26112-26136
0.002
3
6mer
46054-46073
0.002
5
7mer
7766-7792
0.002
0
6mer
28479-28496
0.002
2
6mer
26546-26550
0.002
1
6mer
30154-30175
0.002
6
6mer
48405-48415
0.001
0
6mer
5480-5498
0.001
0
6mer
13674-13678
0.001
0
6mer
8408-8431
0.001
2
6mer
39187-39191
0.001
0
6mer
6584-6611
0.001
0
6mer
39072-39097
0.001
4
6mer
37534-37545
0.001
0
6mer
12711-12735
0.001
8
RP11-25I9.3
hsa-miR-19b-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000615020
Biotype: lincRNA
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1917-1938
0.086
3
RP11-25I9.3
hsa-miR-19b-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000366160
Biotype: pseudogene
Gene id: ENSG00000203334
Gene Name: RP11-25I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1914-1935
0.086
3
RP11-363G2.4
hsa-miR-19b-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
818-828
0.084
0
KCNQ1OT1
hsa-miR-19b-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7941-7952
0.006
1
7mer
78892-78919
0.006
0
8mer
80858-80880
0.005
1
7mer
17744-17763
0.005
1
7mer
55156-55179
0.004
1
7mer
46569-46594
0.003
0
7mer
16330-16352
0.003
0
6mer
342-349
0.003
Not Conserved
6mer
280-299
0.003
0
6mer
1141-1158
0.002
1
7mer
65458-65483
0.002
1
6mer
8506-8510
0.002
1
6mer
26317-26342
0.002
0
6mer
20293-20314
0.002
0
7mer
84327-84343
0.002
1
6mer
67037-67063
0.002
1
6mer
62482-62505
0.002
1
6mer
51608-51625
0.002
1
6mer
82284-82296
0.002
1
6mer
30694-30707
0.002
0
6mer
68573-68598
0.001
3
6mer
3965-3991
0.001
1
6mer
59862-59875
0.001
2
6mer
70790-70799
0.001
1
6mer
76340-76364
0.001
0
6mer
57555-57570
0.001
1
6mer
67768-67772
0.001
1
6mer
78434-78455
0.001
1
6mer
4641-4652
0.001
1
6mer
6017-6024
0.001
0
6mer
57161-57180
0.001
2
6mer
87015-87031
0.001
1
6mer
63086-63108
0.001
0
6mer
74672-74696
0.001
1
6mer
77135-77159
0.001
0
6mer
43096-43117
0.001
1
6mer
15082-15102
0.001
0
6mer
59597-59618
0.001
1
6mer
48671-48687
0.001
0
6mer
54655-54681
0.001
0
6mer
82792-82814
0.001
1
6mer
59524-59538
0.001
0
6mer
74646-74672
0.000
1
AF131217.1
hsa-miR-19b-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000433310
Biotype: lincRNA
Gene id: ENSG00000232855
Gene Name: AF131217.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1046-1066
0.079
4
6mer
772-797
0.004
3
AC006548.28
hsa-miR-19b-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55088-55111
0.014
1
8mer
78360-78377
0.012
0
7mer
71700-71712
0.006
0
8mer
52859-52873
0.005
Not Conserved
7mer
29267-29290
0.004
Not Conserved
6mer
84155-84178
0.004
0
7mer
25996-26018
0.004
1
7mer
41179-41194
0.003
0
7mer
27199-27224
0.003
0
8mer
50687-50709
0.003
Not Conserved
6mer
34480-34505
0.002
1
6mer
41472-41494
0.002
1
6mer
47023-47048
0.002
Not Conserved
6mer
59189-59200
0.001
1
6mer
39449-39475
0.001
1
6mer
8172-8188
0.001
1
6mer
58798-58802
0.001
1
6mer
51359-51372
0.001
Not Conserved
6mer
2591-2615
0.001
0
6mer
40832-40846
0.001
0
6mer
42309-42322
0.001
Not Conserved
6mer
24348-24364
0.001
0
6mer
36383-36403
0.001
1
6mer
5778-5782
0.001
1
6mer
10824-10850
0.001
0
6mer
61386-61412
0.001
Not Conserved
6mer
52710-52730
0.001
Not Conserved
6mer
21739-21762
0.001
0
6mer
58782-58802
0.000
1
LL09NC01-254D11.1
hsa-miR-19b-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000564021
Biotype: antisense
Gene id: ENSG00000261018
Gene Name: LL09NC01-254D11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
202-220
0.057
1
7mer
1752-1757
0.011
2
7mer
351-376
0.008
1
6mer
1563-1585
0.003
0
6mer
1827-1853
0.003
0
H19
hsa-miR-19b-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000436715
Biotype: retained_intron
Gene id: ENSG00000130600
Gene Name: H19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-63
0.058
4
8mer
28-47
0.022
1
PRKG1-AS1
hsa-miR-19b-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038277.1
Biotype: antisense
Gene id: NR_038277.1 (gene)
Gene Name: PRKG1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1770-1792
0.066
9
6mer
771-782
0.005
7
6mer
230-249
0.005
7
6mer
1995-2007
0.004
2
RP11-887P2.5
hsa-miR-19b-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550287
Biotype: antisense
Gene id: ENSG00000258274
Gene Name: RP11-887P2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-79
0.041
1
8mer
227-234
0.038
2
AL035610.1
hsa-miR-19b-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000609782
Biotype: retained_intron
Gene id: ENSG00000232079
Gene Name: AL035610.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
98-121
0.042
1
8mer
115-133
0.038
1
RP11-266K4.13
hsa-miR-19b-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1112-1130
0.066
0
6mer
990-1006
0.013
1
AC025811.3
hsa-miR-19b-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000604312
Biotype: lincRNA
Gene id: ENSG00000270947
Gene Name: AC025811.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-141
0.078
0
RP11-736N17.10
hsa-miR-19b-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000618272
Biotype: lincRNA
Gene id: ENSG00000278071
Gene Name: RP11-736N17.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
647-667
0.078
2
XLOC_001583
hsa-miR-19b-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002713
Biotype: transcript isomorph
Gene id: XLOC_001583
Gene Name: XLOC_001583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
977-1003
0.042
1
8mer
804-831
0.033
0
6mer
1364-1386
0.003
1
CTC-420A11.2
hsa-miR-19b-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562349
Biotype: antisense
Gene id: ENSG00000260115
Gene Name: CTC-420A11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
293-305
0.078
4
LINC00112
hsa-miR-19b-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432830
Biotype: antisense
Gene id: ENSG00000232401
Gene Name: LINC00112
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-69
0.077
1
RP11-734K23.9
hsa-miR-19b-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000613749
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1047-1073
0.039
1
8mer
874-901
0.035
0
6mer
1434-1456
0.003
1
RP11-244B22.6
hsa-miR-19b-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1560-1584
0.076
0
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