LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-19b-3p


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Gene
miRNA
Score
DIANA Links
RP1-90J20.2
hsa-miR-19b-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000437718
Biotype: lincRNA
Gene id: ENSG00000228365
Gene Name: RP1-90J20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
119-143
0.044
0
HOXA11-AS
hsa-miR-19b-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000520395
Biotype: antisense
Gene id: ENSG00000240990
Gene Name: HOXA11-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-333
0.031
8
8mer
185-199
0.013
1
RP11-707A18.1
hsa-miR-19b-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509932
Biotype: lincRNA
Gene id: ENSG00000250125
Gene Name: RP11-707A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-570
0.021
1
9mer
2174-2190
0.017
0
6mer
3508-3526
0.004
0
6mer
2912-2936
0.002
1
RP5-1057B20.3
hsa-miR-19b-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000615357
Biotype: lincRNA
Gene id: ENSG00000277550
Gene Name: RP5-1057B20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-303
0.044
0
NAV2-AS5
hsa-miR-19b-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528726
Biotype: antisense
Gene id: ENSG00000255043
Gene Name: NAV2-AS5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3281-3297
0.044
3
XLOC_003971
hsa-miR-19b-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007371
Biotype: transcript isomorph
Gene id: XLOC_003971
Gene Name: XLOC_003971
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-569
0.021
1
9mer
2173-2189
0.017
0
6mer
3507-3525
0.004
0
6mer
2911-2935
0.002
1
XLOC_012017
hsa-miR-19b-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024736
Biotype: transcript isomorph
Gene id: XLOC_012017
Gene Name: XLOC_012017
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
551-567
0.032
1
8mer
1336-1361
0.008
1
7mer
1682-1697
0.004
0
RP11-332H14.2
hsa-miR-19b-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610036
Biotype: lincRNA
Gene id: ENSG00000272994
Gene Name: RP11-332H14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2600-2609
0.036
3
6mer
87-104
0.006
3
6mer
1703-1720
0.002
1
XLOC_010893
hsa-miR-19b-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022580
Biotype: transcript isomorph
Gene id: XLOC_010893
Gene Name: XLOC_010893
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
255-261
0.043
3
RP11-250B2.6
hsa-miR-19b-3p
0.880
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606629
Biotype: lincRNA
Gene id: ENSG00000272129
Gene Name: RP11-250B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-331
0.037
1
6mer
49-63
0.006
1
RP11-556N21.1
hsa-miR-19b-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000453498
Biotype: processed_transcript
Gene id: ENSG00000243008
Gene Name: RP11-556N21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
891-907
0.043
0
INTS6-AS1
hsa-miR-19b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000601318
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
480-490
0.043
1
XLOC_000313
hsa-miR-19b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00002104
Biotype: transcript isomorph
Gene id: XLOC_000313
Gene Name: XLOC_000313
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-48
0.043
3
LINC01011
hsa-miR-19b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000605901
Biotype: lincRNA
Gene id: ENSG00000244041
Gene Name: LINC01011
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
720-738
0.033
2
7mer
850-869
0.010
2
INTS6-AS1
hsa-miR-19b-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000599315
Biotype: antisense
Gene id: ENSG00000236778
Gene Name: INTS6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
644-654
0.043
1
AC096558.1
hsa-miR-19b-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000550516
Biotype: antisense
Gene id: ENSG00000228655
Gene Name: AC096558.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-568
0.043
4
RP11-320N21.1
hsa-miR-19b-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501164
Biotype: antisense
Gene id: ENSG00000245080
Gene Name: RP11-320N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2016-2038
0.035
3
6mer
2282-2300
0.004
1
6mer
2454-2466
0.003
0
LINC00836
hsa-miR-19b-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_108069.1
Biotype: lincRNA
Gene id: NR_108069.1 (gene)
Gene Name: LINC00836
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1172-1178
0.039
1
6mer
896-917
0.004
2
MIR4534
hsa-miR-19b-3p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19184-19201
0.008
1
7mer
17118-17128
0.006
1
8mer
18488-18512
0.005
1
6mer
41020-41046
0.003
5
6mer
35208-35224
0.002
10
6mer
10380-10396
0.002
1
6mer
36702-36726
0.002
0
6mer
18867-18887
0.001
1
6mer
30355-30375
0.001
2
6mer
51569-51589
0.001
3
6mer
44174-44192
0.001
0
6mer
14123-14133
0.001
0
6mer
44818-44833
0.001
1
6mer
21060-21070
0.001
1
6mer
13820-13846
0.001
Not Conserved
6mer
46569-46588
0.001
1
6mer
4514-4540
0.001
1
6mer
33086-33105
0.001
2
6mer
15676-15692
0.001
Not Conserved
6mer
29387-29409
0.001
1
6mer
15807-15829
0.001
1
6mer
21081-21099
0.001
1
6mer
22107-22128
0.001
Not Conserved
RP11-158I3.3
hsa-miR-19b-3p
0.874
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000595705
Biotype: lincRNA
Gene id: ENSG00000269826
Gene Name: RP11-158I3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-19b-3p
Sequence: ugugcaaauccaugcaaaacuga
MirBase ID: MIMAT0000074
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
800-824
0.042
1
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