LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p

ENST00000597346

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Gene
miRNA
Score
DIANA Links
KCNQ1OT1
hsa-miR-199a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33571-33583
0.009
Not Conserved
7mer
48610-48634
0.006
0
8mer
36666-36690
0.006
0
8mer
40558-40564
0.005
0
9mer
66163-66181
0.005
2
9mer
78168-78191
0.005
0
8mer
11709-11727
0.004
1
7mer
35447-35471
0.004
0
7mer
82392-82405
0.004
0
8mer
68568-68581
0.003
2
8mer
65807-65821
0.003
3
7mer
86166-86190
0.003
1
7mer
88819-88835
0.003
0
7mer
68470-68493
0.003
1
7mer
77131-77147
0.002
0
7mer
47322-47346
0.002
2
7mer
64345-64364
0.002
0
6mer
91012-91027
0.002
1
6mer
55734-55759
0.002
2
7mer
58574-58591
0.002
0
6mer
88662-88686
0.002
1
7mer
55564-55581
0.002
0
7mer
56286-56309
0.002
1
6mer
83628-83651
0.002
1
7mer
59054-59081
0.002
1
6mer
39635-39662
0.002
0
6mer
4789-4805
0.002
1
6mer
64671-64690
0.001
0
6mer
76055-76078
0.001
3
7mer
58509-58519
0.001
1
6mer
43252-43275
0.001
1
6mer
14955-14971
0.001
1
6mer
84270-84295
0.001
1
6mer
85959-85977
0.001
2
7mer
78550-78564
0.001
1
6mer
26603-26611
0.001
0
6mer
75910-75918
0.001
2
6mer
63456-63475
0.001
1
6mer
78347-78371
0.001
1
6mer
57769-57788
0.001
1
6mer
26366-26383
0.001
0
7mer
31911-31933
0.001
Not Conserved
6mer
77937-77954
0.001
1
7mer
66426-66447
0.001
0
6mer
80204-80226
0.001
1
6mer
83443-83460
0.001
2
6mer
62535-62559
0.001
1
6mer
49550-49574
0.001
0
6mer
54837-54864
0.001
0
6mer
31533-31552
0.001
0
6mer
43766-43779
0.001
0
6mer
55458-55475
0.001
1
6mer
31310-31325
0.001
Not Conserved
6mer
62427-62447
0.001
1
6mer
82161-82187
0.001
1
6mer
43699-43725
0.000
1
7mer
36601-36625
0.000
0
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