LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
LINC01029
hsa-miR-199a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582805
Biotype: lincRNA
Gene id: ENSG00000265843
Gene Name: LINC01029
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
471-488
0.040
1
XLOC_007035
hsa-miR-199a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5363-5381
0.015
Not Conserved
7mer
18417-18422
0.007
Not Conserved
8mer
1552-1569
0.007
0
6mer
14533-14544
0.002
Not Conserved
6mer
4793-4814
0.001
1
6mer
11794-11816
0.001
1
6mer
3322-3340
0.001
0
6mer
7936-7940
0.001
0
6mer
8951-8975
0.001
1
6mer
3733-3753
0.001
0
6mer
8873-8886
0.001
0
6mer
7442-7460
0.001
0
6mer
2557-2582
0.001
0
XLOC_008297
hsa-miR-199a-5p
0.854
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017638
Biotype: transcript isomorph
Gene id: XLOC_008297
Gene Name: XLOC_008297
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-355
0.040
1
RP11-390E23.3
hsa-miR-199a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440504
Biotype: antisense
Gene id: ENSG00000230442
Gene Name: RP11-390E23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
143-163
0.035
1
6mer
389-413
0.005
2
XLOC_010236
hsa-miR-199a-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020260
Biotype: transcript isomorph
Gene id: XLOC_010236
Gene Name: XLOC_010236
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2582-2602
0.039
0
XLOC_002498
hsa-miR-199a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004594
Biotype: transcript isomorph
Gene id: XLOC_002498
Gene Name: XLOC_002498
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6258-6281
0.037
2
6mer
839-862
0.002
1
AP003774.1
hsa-miR-199a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000447028
Biotype: antisense
Gene id: ENSG00000236935
Gene Name: AP003774.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-661
0.039
1
MIR600HG
hsa-miR-199a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000449175
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-352
0.028
1
8mer
2211-2233
0.007
0
6mer
1662-1683
0.001
1
6mer
1284-1310
0.001
0
6mer
3699-3712
0.001
2
6mer
3755-3773
0.001
Not Conserved
LINC00663
hsa-miR-199a-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590092
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
168-181
0.016
1
6mer
99-114
0.013
1
7mer
421-442
0.007
0
6mer
919-946
0.003
Not Conserved
6mer
520-545
0.001
Not Conserved
MIR600HG
hsa-miR-199a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000545631
Biotype: sense_intronic
Gene id: ENSG00000236901
Gene Name: MIR600HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-345
0.028
1
8mer
2204-2226
0.007
0
6mer
1655-1676
0.001
1
6mer
1277-1303
0.001
0
6mer
3692-3705
0.001
2
6mer
3748-3766
0.001
Not Conserved
LINC01099
hsa-miR-199a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512527
Biotype: lincRNA
Gene id: ENSG00000251504
Gene Name: LINC01099
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-255
0.039
2
RP11-860B13.3
hsa-miR-199a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543527
Biotype: antisense
Gene id: ENSG00000256512
Gene Name: RP11-860B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
108-125
0.039
1
RP1-178F10.3
hsa-miR-199a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577764
Biotype: lincRNA
Gene id: ENSG00000267350
Gene Name: RP1-178F10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1408-1429
0.031
1
6mer
161-176
0.004
1
6mer
808-832
0.002
1
6mer
897-922
0.002
1
RP11-148I19.1
hsa-miR-199a-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527828
Biotype: lincRNA
Gene id: ENSG00000255300
Gene Name: RP11-148I19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.039
1
TMX2-CTNND1
hsa-miR-199a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037646.1
Biotype: sense
Gene id: NR_037646.1 (gene)
Gene Name: TMX2-CTNND1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3286-3310
0.018
9
6mer
404-419
0.007
9
7mer
5976-5990
0.007
1
6mer
3059-3076
0.005
10
6mer
1469-1485
0.002
5
TTC28-AS1
hsa-miR-199a-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000454741
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-215
0.022
1
9mer
4744-4764
0.008
1
7mer
331-357
0.005
2
6mer
1631-1653
0.002
3
6mer
1436-1440
0.001
0
6mer
3268-3288
0.001
1
7mer
3384-3407
0.001
1
LINC01533
hsa-miR-199a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593056
Biotype: lincRNA
Gene id: ENSG00000267779
Gene Name: LINC01533
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-583
0.039
10
CHRM3-AS2
hsa-miR-199a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000593855
Biotype: antisense
Gene id: ENSG00000233355
Gene Name: CHRM3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-194
0.035
1
6mer
540-560
0.004
2
XLOC_010012
hsa-miR-199a-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020713
Biotype: transcript isomorph
Gene id: XLOC_010012
Gene Name: XLOC_010012
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
862-876
0.035
1
6mer
746-772
0.004
0
LINC01309
hsa-miR-199a-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444795
Biotype: lincRNA
Gene id: ENSG00000234551
Gene Name: LINC01309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-206
0.038
1
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