LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RP11-1437A8.4
hsa-miR-199a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
23-36
0.015
0
7mer
1873-1885
0.015
0
6mer
1707-1727
0.012
0
XLOC_006460
hsa-miR-199a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013820
Biotype: transcript isomorph
Gene id: XLOC_006460
Gene Name: XLOC_006460
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
975-981
0.037
1
SLC7A11-AS1
hsa-miR-199a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510767
Biotype: antisense
Gene id: ENSG00000250033
Gene Name: SLC7A11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3680-3705
0.037
0
6mer
4577-4590
0.005
0
RP11-415D17.4
hsa-miR-199a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455530
Biotype: lincRNA
Gene id: ENSG00000238156
Gene Name: RP11-415D17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-296
0.041
3
AP002954.4
hsa-miR-199a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526274
Biotype: antisense
Gene id: ENSG00000255422
Gene Name: AP002954.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-402
0.041
6
SOX2-OT
hsa-miR-199a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490005
Biotype: sense_overlapping
Gene id: ENSG00000242808
Gene Name: SOX2-OT
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-331
0.041
1
CH17-264L24.1
hsa-miR-199a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
727-742
0.011
1
9mer
5161-5181
0.011
0
6mer
8335-8356
0.007
0
6mer
8102-8119
0.004
0
6mer
771-789
0.003
1
6mer
2117-2137
0.002
0
7mer
4315-4331
0.001
0
6mer
3865-3882
0.001
0
TTTY1
hsa-miR-199a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000250805
Biotype: lincRNA
Gene id: ENSG00000129845
Gene Name: TTTY1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
14-37
0.041
Not Conserved
RP11-488I20.3
hsa-miR-199a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_027080.2
Biotype: lincRNA
Gene id: NR_027080.2 (gene)
Gene Name: RP11-488I20.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-100
0.023
1
6mer
1170-1192
0.006
0
6mer
108-121
0.006
0
7mer
403-428
0.006
0
RP11-284A20.2
hsa-miR-199a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510242
Biotype: lincRNA
Gene id: ENSG00000249261
Gene Name: RP11-284A20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
555-579
0.041
1
LINC01123
hsa-miR-199a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046112.1
Biotype: lincRNA
Gene id: NR_046112.1 (gene)
Gene Name: LINC01123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-39
0.023
5
6mer
111-123
0.011
4
7mer
471-485
0.007
1
RP11-359M6.1
hsa-miR-199a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552167
Biotype: lincRNA
Gene id: ENSG00000257474
Gene Name: RP11-359M6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
447-469
0.041
3
TTTY1B
hsa-miR-199a-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000250776
Biotype: lincRNA
Gene id: ENSG00000129816
Gene Name: TTTY1B
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
874-897
0.041
Not Conserved
AC062021.1
hsa-miR-199a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429008
Biotype: lincRNA
Gene id: ENSG00000226939
Gene Name: AC062021.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-228
0.040
1
LINC00616
hsa-miR-199a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505874
Biotype: lincRNA
Gene id: ENSG00000248307
Gene Name: LINC00616
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-36
0.040
5
RP11-96D24.1
hsa-miR-199a-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555636
Biotype: lincRNA
Gene id: ENSG00000259072
Gene Name: RP11-96D24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
597-622
0.040
1
ERVK3-1
hsa-miR-199a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000608004
Biotype: lincRNA
Gene id: ENSG00000142396
Gene Name: ERVK3-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-331
0.040
0
XLOC_012467
hsa-miR-199a-5p
0.857
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025630
Biotype: transcript isomorph
Gene id: XLOC_012467
Gene Name: XLOC_012467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
754-777
0.036
0
7mer
558-580
0.004
0
C6orf123
hsa-miR-199a-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000366822
Biotype: lincRNA
Gene id: ENSG00000146521
Gene Name: C6orf123
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
766-786
0.037
1
6mer
592-606
0.003
1
MAGI1-AS1
hsa-miR-199a-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472514
Biotype: antisense
Gene id: ENSG00000240175
Gene Name: MAGI1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-50
0.032
1
7mer
325-342
0.008
2
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