LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RP11-552M11.8
hsa-miR-199a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564771
Biotype: sense_overlapping
Gene id: ENSG00000260948
Gene Name: RP11-552M11.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1819-1845
0.035
0
6mer
138-152
0.008
2
ZNF833P
hsa-miR-199a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000344893
Biotype: lincRNA
Gene id: ENSG00000197332
Gene Name: ZNF833P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
651-664
0.010
4
7mer
2875-2892
0.006
1
7mer
2545-2560
0.004
1
7mer
2623-2642
0.004
1
7mer
1964-1976
0.004
1
7mer
1859-1872
0.003
1
7mer
2132-2140
0.003
0
7mer
2373-2392
0.003
1
7mer
2289-2308
0.003
1
7mer
2204-2224
0.002
0
6mer
998-1007
0.002
0
XLOC_012897
hsa-miR-199a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026222
Biotype: transcript isomorph
Gene id: XLOC_012897
Gene Name: XLOC_012897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
986-1003
0.032
1
7mer
131-155
0.011
0
KIAA1614-AS1
hsa-miR-199a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415647
Biotype: antisense
Gene id: ENSG00000232586
Gene Name: KIAA1614-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1290-1316
0.035
0
7mer
90-101
0.008
0
CTD-2014E2.6
hsa-miR-199a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567765
Biotype: lincRNA
Gene id: ENSG00000261475
Gene Name: CTD-2014E2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-410
0.043
1
LINC01029
hsa-miR-199a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000577408
Biotype: lincRNA
Gene id: ENSG00000265843
Gene Name: LINC01029
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
991-1008
0.032
1
7mer
136-160
0.011
0
CTD-2547L16.1
hsa-miR-199a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517747
Biotype: antisense
Gene id: ENSG00000245281
Gene Name: CTD-2547L16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
779-796
0.030
0
8mer
215-234
0.012
2
RP3-323A16.1
hsa-miR-199a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53653-53659
0.015
Not Conserved
7mer
37859-37879
0.003
2
7mer
31194-31216
0.003
0
6mer
18525-18550
0.002
1
6mer
20862-20879
0.002
1
6mer
32381-32400
0.002
0
7mer
4820-4843
0.002
0
6mer
48234-48258
0.002
1
6mer
45396-45421
0.001
1
6mer
47171-47185
0.001
1
6mer
10670-10695
0.001
0
6mer
45861-45888
0.001
1
6mer
39355-39376
0.001
Not Conserved
6mer
43094-43112
0.001
1
6mer
44109-44130
0.001
0
6mer
12119-12135
0.001
1
6mer
14603-14615
0.001
0
6mer
35466-35481
0.001
Not Conserved
6mer
5207-5224
0.001
0
7mer
17183-17203
0.001
1
CYP1B1-AS1
hsa-miR-199a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620177
Biotype: antisense
Gene id: ENSG00000232973
Gene Name: CYP1B1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-544
0.034
1
6mer
163-189
0.004
2
6mer
393-414
0.003
2
6mer
237-257
0.002
0
XLOC_008828
hsa-miR-199a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018521
Biotype: transcript isomorph
Gene id: XLOC_008828
Gene Name: XLOC_008828
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-154
0.023
1
6mer
39-62
0.019
1
CTD-3018O17.3
hsa-miR-199a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601562
Biotype: lincRNA
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
386-409
0.024
1
7mer
623-633
0.018
1
RP11-321F6.2
hsa-miR-199a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612806
Biotype: sense_intronic
Gene id: ENSG00000274995
Gene Name: RP11-321F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
480-499
0.042
6
RP5-1050E16.2
hsa-miR-199a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421297
Biotype: lincRNA
Gene id: ENSG00000226206
Gene Name: RP5-1050E16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
901-907
0.042
0
RP11-413P11.1
hsa-miR-199a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000438829
Biotype: lincRNA
Gene id: ENSG00000224445
Gene Name: RP11-413P11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-138
0.042
1
RP11-438B23.2
hsa-miR-199a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000566293
Biotype: sense_overlapping
Gene id: ENSG00000260412
Gene Name: RP11-438B23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2797-2822
0.020
2
9mer
6679-6686
0.018
1
6mer
897-919
0.003
3
7mer
2775-2791
0.001
1
LINC01483
hsa-miR-199a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587241
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
220-234
0.030
2
7mer
112-130
0.008
1
6mer
323-340
0.004
0
LL22NC03-86G7.1
hsa-miR-199a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19189-19209
0.005
0
8mer
22484-22510
0.004
1
7mer
27617-27642
0.003
0
7mer
25224-25248
0.002
0
6mer
17745-17750
0.002
7
7mer
2336-2356
0.002
1
7mer
18110-18130
0.002
3
6mer
1022-1034
0.002
1
7mer
4338-4364
0.002
1
6mer
7300-7318
0.002
0
7mer
14255-14279
0.002
1
6mer
15877-15897
0.001
1
6mer
31237-31263
0.001
1
6mer
29472-29490
0.001
1
6mer
35506-35533
0.001
1
6mer
35946-35967
0.001
0
6mer
6205-6230
0.001
1
6mer
22111-22127
0.001
1
6mer
34608-34633
0.001
1
6mer
21653-21674
0.001
1
7mer
15994-16015
0.001
1
6mer
12530-12555
0.001
1
7mer
1079-1084
0.001
Not Conserved
6mer
4763-4788
0.001
0
7mer
18928-18951
0.001
1
6mer
18366-18388
0.000
1
7mer
16031-16055
0.000
1
6mer
12564-12578
0.000
1
XLOC_007450
hsa-miR-199a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015706
Biotype: transcript isomorph
Gene id: XLOC_007450
Gene Name: XLOC_007450
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1202-1208
0.042
0
GRIK1-AS1
hsa-miR-199a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000413131
Biotype: antisense
Gene id: ENSG00000174680
Gene Name: GRIK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26-49
0.042
2
RP11-509A17.3
hsa-miR-199a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557528
Biotype: lincRNA
Gene id: ENSG00000258654
Gene Name: RP11-509A17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-138
0.028
1
7mer
60-84
0.007
Not Conserved
6mer
797-822
0.006
0
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