LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RP11-78B10.2
hsa-miR-199a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623503
Biotype: antisense
Gene id: ENSG00000236911
Gene Name: RP11-78B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
601-624
0.046
0
AC018693.6
hsa-miR-199a-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442829
Biotype: antisense
Gene id: ENSG00000225284
Gene Name: AC018693.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-33
0.046
6
CTC-367F4.1
hsa-miR-199a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504204
Biotype: lincRNA
Gene id: ENSG00000251031
Gene Name: CTC-367F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-26
0.045
0
LINC01301
hsa-miR-199a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000476425
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
171-188
0.042
6
6mer
445-468
0.003
1
CTC-459F4.3
hsa-miR-199a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-318
0.045
0
XLOC_010809
hsa-miR-199a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022480
Biotype: transcript isomorph
Gene id: XLOC_010809
Gene Name: XLOC_010809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
102-127
0.045
1
RP11-589M4.1
hsa-miR-199a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555689
Biotype: antisense
Gene id: ENSG00000259049
Gene Name: RP11-589M4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
510-523
0.045
1
XLOC_009649
hsa-miR-199a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020316
Biotype: transcript isomorph
Gene id: XLOC_009649
Gene Name: XLOC_009649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
156-175
0.026
1
7mer
89-110
0.019
1
RP11-456H18.1
hsa-miR-199a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456036
Biotype: antisense
Gene id: ENSG00000225102
Gene Name: RP11-456H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-148
0.045
1
RP3-412A9.17
hsa-miR-199a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13225-13244
0.011
0
9mer
10531-10555
0.005
1
7mer
7868-7891
0.004
3
6mer
131-155
0.004
0
7mer
11160-11176
0.003
1
6mer
285-306
0.002
Not Conserved
6mer
2328-2348
0.002
1
6mer
4669-4694
0.002
1
6mer
13547-13570
0.002
1
6mer
1414-1425
0.002
1
6mer
10981-11003
0.001
0
6mer
2132-2147
0.001
1
6mer
8189-8205
0.001
Not Conserved
6mer
1906-1926
0.001
0
6mer
3584-3601
0.001
1
6mer
12533-12554
0.001
0
6mer
2414-2435
0.001
0
6mer
1511-1535
0.000
Not Conserved
RP11-25I15.3
hsa-miR-199a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550177
Biotype: lincRNA
Gene id: ENSG00000257114
Gene Name: RP11-25I15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
927-949
0.039
2
6mer
422-440
0.006
3
XLOC_002040
hsa-miR-199a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005127
Biotype: transcript isomorph
Gene id: XLOC_002040
Gene Name: XLOC_002040
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1243-1268
0.044
2
LINC01022
hsa-miR-199a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415652
Biotype: antisense
Gene id: ENSG00000232715
Gene Name: LINC01022
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-368
0.040
Not Conserved
6mer
220-245
0.004
0
CTC-459F4.3
hsa-miR-199a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592404
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-347
0.044
0
RP11-717H13.1
hsa-miR-199a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512241
Biotype: lincRNA
Gene id: ENSG00000248339
Gene Name: RP11-717H13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-627
0.023
1
8mer
4541-4547
0.018
0
6mer
1330-1357
0.002
1
RP11-277P12.9
hsa-miR-199a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535911
Biotype: lincRNA
Gene id: ENSG00000256155
Gene Name: RP11-277P12.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-374
0.044
0
AC079586.1
hsa-miR-199a-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000375987
Biotype: lincRNA
Gene id: ENSG00000204460
Gene Name: AC079586.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-175
0.031
1
6mer
720-743
0.004
1
7mer
998-1022
0.004
1
7mer
1242-1266
0.003
1
6mer
923-946
0.002
0
C6orf123
hsa-miR-199a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000495520
Biotype: lincRNA
Gene id: ENSG00000146521
Gene Name: C6orf123
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1232-1252
0.036
1
6mer
426-438
0.004
0
6mer
1058-1072
0.003
1
RNF219-AS1
hsa-miR-199a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607862
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3963-3978
0.024
11
8mer
5570-5588
0.018
1
7mer
2348-2357
0.002
1
TPTEP1
hsa-miR-199a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
324-338
0.024
0
6mer
232-258
0.019
1
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