LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
RP11-260M2.1
hsa-miR-199a-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608095
Biotype: antisense
Gene id: ENSG00000272807
Gene Name: RP11-260M2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-172
0.058
0
6mer
309-328
0.003
1
RP11-478P10.1
hsa-miR-199a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_109900.1
Biotype: lincRNA
Gene id: NR_109900.1 (gene)
Gene Name: RP11-478P10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4038-4063
0.044
1
7mer
3104-3111
0.008
0
7mer
3416-3430
0.006
1
6mer
1125-1136
0.002
1
RP11-478P10.1
hsa-miR-199a-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510444
Biotype: lincRNA
Gene id: ENSG00000249584
Gene Name: RP11-478P10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4042-4067
0.044
1
7mer
3108-3115
0.008
0
7mer
3420-3434
0.006
1
6mer
1129-1140
0.002
1
XLOC_008245
hsa-miR-199a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017380
Biotype: transcript isomorph
Gene id: XLOC_008245
Gene Name: XLOC_008245
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
303-320
0.047
1
6mer
119-142
0.012
1
XLOC_005212
hsa-miR-199a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011164
Biotype: transcript isomorph
Gene id: XLOC_005212
Gene Name: XLOC_005212
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-409
0.058
3
CTC-459F4.3
hsa-miR-199a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586220
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-419
0.058
0
RP11-340I6.7
hsa-miR-199a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000600182
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-94
0.058
0
RPL34-AS1
hsa-miR-199a-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507248
Biotype: lincRNA
Gene id: ENSG00000234492
Gene Name: RPL34-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
13-33
0.044
1
6mer
235-253
0.005
1
7mer
1378-1402
0.004
1
6mer
2521-2543
0.003
3
6mer
3613-3631
0.002
0
RP11-309H21.3
hsa-miR-199a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000563320
Biotype: lincRNA
Gene id: ENSG00000261642
Gene Name: RP11-309H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-316
0.057
0
XLOC_004802
hsa-miR-199a-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010319
Biotype: transcript isomorph
Gene id: XLOC_004802
Gene Name: XLOC_004802
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-74
0.057
1
C14orf182
hsa-miR-199a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000529902
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-146
0.025
2
7mer
4214-4237
0.014
1
8mer
2686-2709
0.009
1
6mer
295-317
0.003
1
6mer
652-678
0.002
1
6mer
3190-3206
0.002
1
6mer
3161-3185
0.001
1
6mer
3148-3164
0.001
Not Conserved
RP11-760D2.1
hsa-miR-199a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436042
Biotype: lincRNA
Gene id: ENSG00000225488
Gene Name: RP11-760D2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-180
0.056
1
RP11-340I6.7
hsa-miR-199a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000596569
Biotype: lincRNA
Gene id: ENSG00000236299
Gene Name: RP11-340I6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-147
0.056
0
LINC01123
hsa-miR-199a-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_046111.1
Biotype: lincRNA
Gene id: NR_046111.1 (gene)
Gene Name: LINC01123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
16-39
0.023
5
9mer
1386-1401
0.015
0
6mer
111-123
0.011
4
7mer
1713-1727
0.006
1
FAM66C
hsa-miR-199a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541558
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-628
0.051
1
6mer
339-366
0.004
0
XLOC_004606
hsa-miR-199a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010141
Biotype: transcript isomorph
Gene id: XLOC_004606
Gene Name: XLOC_004606
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
455-468
0.035
4
8mer
72-95
0.019
4
RP11-553E24.2
hsa-miR-199a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567231
Biotype: lincRNA
Gene id: ENSG00000260477
Gene Name: RP11-553E24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-69
0.054
1
XXbac-BPG181B23.7
hsa-miR-199a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606743
Biotype: lincRNA
Gene id: ENSG00000272221
Gene Name: XXbac-BPG181B23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-99
0.046
1
6mer
1150-1160
0.008
1
XLOC_008237
hsa-miR-199a-5p
0.930
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017372
Biotype: transcript isomorph
Gene id: XLOC_008237
Gene Name: XLOC_008237
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-156
0.053
1
RP11-691G17.1
hsa-miR-199a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567488
Biotype: lincRNA
Gene id: ENSG00000261826
Gene Name: RP11-691G17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
952-978
0.032
1
6mer
1703-1724
0.011
1
6mer
760-780
0.009
1
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