LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-199a-5p


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Gene
miRNA
Score
DIANA Links
LINC00635
hsa-miR-199a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608137
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
223-243
0.038
1
RP11-227F19.2
hsa-miR-199a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510602
Biotype: lincRNA
Gene id: ENSG00000249122
Gene Name: RP11-227F19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-467
0.038
2
SAMSN1-AS1
hsa-miR-199a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000449214
Biotype: antisense
Gene id: ENSG00000223662
Gene Name: SAMSN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-120
0.038
3
XLOC_005847
hsa-miR-199a-5p
0.844
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012290
Biotype: transcript isomorph
Gene id: XLOC_005847
Gene Name: XLOC_005847
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
87-106
0.038
0
XLOC_013274
hsa-miR-199a-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5343-5364
0.010
1
7mer
5055-5076
0.008
1
6mer
3410-3426
0.008
1
7mer
5267-5288
0.005
1
6mer
2840-2851
0.003
0
6mer
4844-4869
0.002
0
6mer
3846-3857
0.002
0
RP11-95I16.2
hsa-miR-199a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000414774
Biotype: lincRNA
Gene id: ENSG00000227307
Gene Name: RP11-95I16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
38-46
0.038
1
XLOC_001228
hsa-miR-199a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001842
Biotype: transcript isomorph
Gene id: XLOC_001228
Gene Name: XLOC_001228
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
582-598
0.036
0
6mer
2308-2317
0.002
1
LINC00421
hsa-miR-199a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000413833
Biotype: lincRNA
Gene id: ENSG00000236834
Gene Name: LINC00421
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-534
0.038
0
XLOC_010290
hsa-miR-199a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021468
Biotype: transcript isomorph
Gene id: XLOC_010290
Gene Name: XLOC_010290
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-534
0.038
0
CTD-2369P2.8
hsa-miR-199a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589379
Biotype: antisense
Gene id: ENSG00000267607
Gene Name: CTD-2369P2.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-367
0.025
1
7mer
267-293
0.008
1
6mer
75-101
0.005
0
XLOC_002215
hsa-miR-199a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004341
Biotype: transcript isomorph
Gene id: XLOC_002215
Gene Name: XLOC_002215
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
HREpiC Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-273
0.017
1
8mer
185-200
0.010
Not Conserved
7mer
40-60
0.006
0
7mer
143-159
0.005
0
XLOC_006753
hsa-miR-199a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5592-5597
0.017
11
9mer
4744-4768
0.011
3
7mer
648-672
0.003
1
7mer
3447-3469
0.003
1
7mer
5035-5054
0.002
1
6mer
4009-4016
0.001
2
ITGA9-AS1
hsa-miR-199a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000430620
Biotype: antisense
Gene id: ENSG00000235257
Gene Name: ITGA9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-29
0.037
0
CHRM3-AS2
hsa-miR-199a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458325
Biotype: antisense
Gene id: ENSG00000233355
Gene Name: CHRM3-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
411-421
0.027
1
7mer
814-834
0.010
0
LINC00293
hsa-miR-199a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-568
0.021
1
6mer
296-321
0.008
0
6mer
1101-1121
0.005
0
6mer
1053-1076
0.004
0
XLOC_013265
hsa-miR-199a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1267-1291
0.027
0
6mer
561-574
0.011
0
RP1-154K9.2
hsa-miR-199a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000440002
Biotype: lincRNA
Gene id: ENSG00000231772
Gene Name: RP1-154K9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
100-122
0.037
0
XLOC_010574
hsa-miR-199a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021973
Biotype: transcript isomorph
Gene id: XLOC_010574
Gene Name: XLOC_010574
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
928-948
0.037
0
CHRM3-AS2
hsa-miR-199a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103776.1
Biotype: antisense
Gene id: NR_103776.1 (gene)
Gene Name: CHRM3-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-419
0.027
1
7mer
812-832
0.010
0
LINC00293
hsa-miR-199a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-199a-5p
Sequence: cccaguguucagacuaccuguuc
MirBase ID: MIMAT0000231
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
558-579
0.021
1
6mer
307-332
0.007
0
6mer
1112-1132
0.005
0
6mer
1064-1087
0.004
0
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