LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CTA-392C11.1
hsa-miR-182-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521030
Biotype: lincRNA
Gene id: ENSG00000253802
Gene Name: CTA-392C11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-56
0.059
1
XLOC_007690
hsa-miR-182-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-308
0.035
1
6mer
197-214
0.013
1
7mer
1200-1215
0.011
0
RP11-89H19.1
hsa-miR-182-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000380601
Biotype: antisense
Gene id: ENSG00000205537
Gene Name: RP11-89H19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
253-268
0.059
7
FGF14-IT1
hsa-miR-182-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437115
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1179-1203
0.033
8
8mer
1435-1447
0.015
0
6mer
166-189
0.006
2
6mer
1687-1707
0.004
3
RP11-277P12.10
hsa-miR-182-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539009
Biotype: lincRNA
Gene id: ENSG00000256288
Gene Name: RP11-277P12.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-121
0.058
0
F10-AS1
hsa-miR-182-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000424635
Biotype: antisense
Gene id: ENSG00000231882
Gene Name: F10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-252
0.058
0
RP11-519G16.5
hsa-miR-182-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559553
Biotype: antisense
Gene id: ENSG00000259342
Gene Name: RP11-519G16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
121-146
0.054
1
6mer
74-99
0.004
1
RP11-488I20.8
hsa-miR-182-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562572
Biotype: lincRNA
Gene id: ENSG00000260958
Gene Name: RP11-488I20.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-228
0.050
1
6mer
160-181
0.008
0
AC021224.1
hsa-miR-182-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000573479
Biotype: lincRNA
Gene id: ENSG00000262477
Gene Name: AC021224.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
186-208
0.057
0
LOC100287010
hsa-miR-182-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037885.2
Biotype: lincRNA
Gene id: NR_037885.2 (gene)
Gene Name: LOC100287010
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
775-800
0.057
3
THTPA
hsa-miR-182-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557568
Biotype: retained_intron
Gene id: ENSG00000157306
Gene Name: THTPA
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-240
0.040
6
6mer
29-45
0.017
9
RP11-452L6.7
hsa-miR-182-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569782
Biotype: antisense
Gene id: ENSG00000260625
Gene Name: RP11-452L6.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
580-601
0.057
1
ERVH48-1
hsa-miR-182-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000617971
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
470-487
0.040
0
6mer
579-598
0.011
0
6mer
2020-2034
0.003
Not Conserved
6mer
1345-1355
0.002
Not Conserved
SAP30L-AS1
hsa-miR-182-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000524264
Biotype: antisense
Gene id: ENSG00000245275
Gene Name: SAP30L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
662-679
0.057
5
XLOC_003897
hsa-miR-182-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007417
Biotype: transcript isomorph
Gene id: XLOC_003897
Gene Name: XLOC_003897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
478-504
0.047
2
6mer
1185-1210
0.010
8
CLIP1-AS1
hsa-miR-182-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539034
Biotype: lincRNA
Gene id: ENSG00000257097
Gene Name: CLIP1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-219
0.057
4
XIRP2-AS1
hsa-miR-182-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000525330
Biotype: antisense
Gene id: ENSG00000254552
Gene Name: XIRP2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
405-426
0.057
1
AC023115.2
hsa-miR-182-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000618608
Biotype: lincRNA
Gene id: ENSG00000235885
Gene Name: AC023115.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-528
0.051
9
6mer
291-315
0.006
1
RP11-15H20.6
hsa-miR-182-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598599
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-161
0.057
1
PRNCR1
hsa-miR-182-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109833.1
Biotype: lincRNA
Gene id: NR_109833.1 (gene)
Gene Name: PRNCR1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-507
0.041
1
7mer
224-242
0.008
1
6mer
7892-7913
0.003
2
6mer
10736-10756
0.002
1
6mer
8920-8946
0.001
0
7mer
7501-7524
0.001
0
6mer
6002-6022
0.001
0
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