LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LINC00598
hsa-miR-182-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000542632
Biotype: lincRNA
Gene id: ENSG00000215483
Gene Name: LINC00598
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
843-864
0.047
6
7mer
525-552
0.014
2
6mer
640-663
0.002
1
RP3-399L15.1
hsa-miR-182-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000446358
Biotype: lincRNA
Gene id: ENSG00000232395
Gene Name: RP3-399L15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
618-628
0.059
1
6mer
754-772
0.004
1
GABPB1-AS1
hsa-miR-182-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499326
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
694-713
0.054
0
7mer
82-100
0.009
2
MIR4534
hsa-miR-182-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21453-21478
0.033
1
7mer
5068-5082
0.009
1
7mer
4646-4663
0.004
1
7mer
8519-8538
0.004
2
6mer
17728-17755
0.002
3
6mer
37645-37659
0.002
8
6mer
24520-24535
0.002
4
6mer
48392-48413
0.002
1
6mer
13291-13312
0.001
Not Conserved
6mer
42288-42306
0.001
1
6mer
40443-40468
0.001
0
6mer
46700-46727
0.001
2
6mer
28249-28262
0.001
1
6mer
48415-48436
0.000
1
6mer
28255-28281
0.000
2
RP11-461O7.1
hsa-miR-182-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501259
Biotype: lincRNA
Gene id: ENSG00000246379
Gene Name: RP11-461O7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1887-1912
0.063
7
TSIX
hsa-miR-182-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33577-33590
0.011
3
8mer
8512-8532
0.009
0
7mer
1233-1250
0.007
1
8mer
14468-14489
0.005
Not Conserved
7mer
8104-8125
0.005
1
6mer
36310-36327
0.004
4
6mer
5170-5196
0.002
1
6mer
21090-21099
0.002
2
6mer
30185-30193
0.002
2
6mer
2312-2321
0.002
1
6mer
3234-3256
0.002
2
6mer
25343-25364
0.002
1
6mer
18843-18865
0.002
1
6mer
33366-33391
0.002
3
6mer
23660-23673
0.002
1
6mer
8958-8984
0.002
1
6mer
20490-20517
0.001
Not Conserved
7mer
3964-3989
0.001
0
6mer
30233-30255
0.001
1
XLOC_004846
hsa-miR-182-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010357
Biotype: transcript isomorph
Gene id: XLOC_004846
Gene Name: XLOC_004846
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-213
0.063
1
CTB-138E5.1
hsa-miR-182-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510230
Biotype: antisense
Gene id: ENSG00000249639
Gene Name: CTB-138E5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-419
0.055
3
6mer
303-321
0.008
3
XLOC_008106
hsa-miR-182-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
329-348
0.046
1
6mer
1622-1641
0.011
1
6mer
577-597
0.005
0
RP11-958F21.3
hsa-miR-182-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578129
Biotype: lincRNA
Gene id: ENSG00000265552
Gene Name: RP11-958F21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-527
0.062
8
XLOC_007880
hsa-miR-182-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016890
Biotype: transcript isomorph
Gene id: XLOC_007880
Gene Name: XLOC_007880
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-243
0.062
0
AC009878.2
hsa-miR-182-5p
0.957
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000451579
Biotype: lincRNA
Gene id: ENSG00000235160
Gene Name: AC009878.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
575-590
0.061
2
LINC00945
hsa-miR-182-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000453716
Biotype: lincRNA
Gene id: ENSG00000232539
Gene Name: LINC00945
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
724-739
0.061
9
RP5-1166F10.1
hsa-miR-182-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027088.1
Biotype: lincRNA
Gene id: NR_027088.1 (gene)
Gene Name: RP5-1166F10.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1545-1567
0.038
1
8mer
765-776
0.022
2
XLOC_000033
hsa-miR-182-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000003
Biotype: transcript isomorph
Gene id: XLOC_000033
Gene Name: XLOC_000033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1705-1727
0.039
1
8mer
765-776
0.022
2
CTD-2574D22.4
hsa-miR-182-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567795
Biotype: sense_intronic
Gene id: ENSG00000260114
Gene Name: CTD-2574D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1078-1094
0.007
1
RP5-1166F10.1
hsa-miR-182-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423197
Biotype: lincRNA
Gene id: ENSG00000235054
Gene Name: RP5-1166F10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1545-1567
0.038
1
8mer
765-776
0.022
2
LINC01182
hsa-miR-182-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510907
Biotype: lincRNA
Gene id: ENSG00000250634
Gene Name: LINC01182
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1964-1982
0.049
3
8mer
1572-1583
0.011
0
RP1-193H18.2
hsa-miR-182-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588041
Biotype: lincRNA
Gene id: ENSG00000267194
Gene Name: RP1-193H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1806-1826
0.030
3
7mer
178-190
0.029
2
RP11-121G22.3
hsa-miR-182-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550999
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-552
0.053
5
6mer
467-477
0.006
2
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