LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LL22NC03-2H8.4
hsa-miR-182-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-408
0.067
0
AC010091.1
hsa-miR-182-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413944
Biotype: lincRNA
Gene id: ENSG00000233491
Gene Name: AC010091.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-165
0.067
7
XLOC_013272
hsa-miR-182-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-226
0.056
0
7mer
1325-1337
0.011
Not Conserved
AC010091.1
hsa-miR-182-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000455420
Biotype: lincRNA
Gene id: ENSG00000233491
Gene Name: AC010091.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-166
0.067
7
GABPB1-AS1
hsa-miR-182-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-412
0.032
0
8mer
10084-10104
0.010
2
8mer
12276-12282
0.008
Not Conserved
7mer
7841-7866
0.005
1
7mer
7308-7329
0.003
1
6mer
5986-5997
0.002
1
6mer
9282-9293
0.002
0
6mer
4826-4850
0.002
1
6mer
4478-4494
0.002
2
7mer
11249-11270
0.001
Not Conserved
6mer
11219-11223
0.001
Not Conserved
RP4-530I15.9
hsa-miR-182-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000431019
Biotype: antisense
Gene id: ENSG00000232043
Gene Name: RP4-530I15.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
651-665
0.030
2
8mer
39-51
0.023
Not Conserved
8mer
1939-1952
0.011
2
6mer
1207-1225
0.002
Not Conserved
RP11-973H7.3
hsa-miR-182-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585877
Biotype: sense_intronic
Gene id: ENSG00000267249
Gene Name: RP11-973H7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-237
0.066
2
ENOX1-AS1
hsa-miR-182-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000444442
Biotype: lincRNA
Gene id: ENSG00000233821
Gene Name: ENOX1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
684-701
0.051
2
7mer
2728-2744
0.006
3
6mer
590-601
0.003
0
7mer
2837-2857
0.003
0
6mer
1669-1694
0.002
2
6mer
1720-1730
0.001
3
RP11-619L19.2
hsa-miR-182-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586467
Biotype: antisense
Gene id: ENSG00000267402
Gene Name: RP11-619L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-314
0.050
10
6mer
248-265
0.015
10
RP13-143G15.4
hsa-miR-182-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000417643
Biotype: antisense
Gene id: ENSG00000237596
Gene Name: RP13-143G15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-381
0.065
4
RP11-79H23.3
hsa-miR-182-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000565297
Biotype: lincRNA
Gene id: ENSG00000261618
Gene Name: RP11-79H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
146-168
0.049
Not Conserved
7mer
2083-2101
0.007
1
6mer
548-567
0.004
1
6mer
1927-1944
0.002
1
6mer
2156-2165
0.002
0
XLOC_001772
hsa-miR-182-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003954
Biotype: transcript isomorph
Gene id: XLOC_001772
Gene Name: XLOC_001772
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
262-284
0.053
4
7mer
50-70
0.012
1
RP11-232C2.1
hsa-miR-182-5p
0.965
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553628
Biotype: antisense
Gene id: ENSG00000258478
Gene Name: RP11-232C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-180
0.057
3
6mer
937-959
0.008
3
XLOC_012839
hsa-miR-182-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026518
Biotype: transcript isomorph
Gene id: XLOC_012839
Gene Name: XLOC_012839
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6205-6224
0.028
1
8mer
459-474
0.026
0
8mer
1408-1426
0.007
Not Conserved
7mer
998-1022
0.004
0
XLOC_002497
hsa-miR-182-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004593
Biotype: transcript isomorph
Gene id: XLOC_002497
Gene Name: XLOC_002497
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-132
0.065
3
GRM7-AS3
hsa-miR-182-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000458713
Biotype: lincRNA
Gene id: ENSG00000226258
Gene Name: GRM7-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
44-67
0.064
1
XLOC_009445
hsa-miR-182-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019641
Biotype: transcript isomorph
Gene id: XLOC_009445
Gene Name: XLOC_009445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-200
0.030
0
9mer
2114-2129
0.022
0
7mer
3869-3883
0.006
0
6mer
202-217
0.005
0
6mer
3779-3803
0.001
0
RP6-201G10.2
hsa-miR-182-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561973
Biotype: lincRNA
Gene id: ENSG00000260118
Gene Name: RP6-201G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
577-587
0.064
3
LINC00598
hsa-miR-182-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616706
Biotype: lincRNA
Gene id: ENSG00000215483
Gene Name: LINC00598
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
845-866
0.047
6
7mer
527-554
0.014
2
6mer
642-665
0.003
1
RP11-662I13.2
hsa-miR-182-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000546353
Biotype: antisense
Gene id: ENSG00000255921
Gene Name: RP11-662I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
394-421
0.064
3
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