LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-268I9.3
hsa-miR-182-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583436
Biotype: lincRNA
Gene id: ENSG00000264149
Gene Name: RP11-268I9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-54
0.071
1
RP1-309I22.2
hsa-miR-182-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3505-3529
0.022
6
8mer
17795-17819
0.017
3
9mer
9177-9194
0.009
3
7mer
14460-14485
0.004
3
6mer
745-769
0.003
3
6mer
24439-24455
0.003
4
7mer
10639-10651
0.002
2
6mer
11360-11374
0.002
0
7mer
10722-10736
0.002
1
6mer
7375-7400
0.002
3
6mer
19317-19343
0.001
1
6mer
18254-18279
0.001
1
6mer
2020-2037
0.001
1
6mer
17618-17634
0.001
1
6mer
2338-2358
0.001
1
ENTPD1-AS1
hsa-miR-182-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458228
Biotype: antisense
Gene id: ENSG00000226688
Gene Name: ENTPD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1216-1238
0.043
3
7mer
2965-2987
0.017
2
7mer
2371-2397
0.010
0
RP11-121G22.3
hsa-miR-182-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550138
Biotype: lincRNA
Gene id: ENSG00000257467
Gene Name: RP11-121G22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
540-562
0.064
5
6mer
477-487
0.007
2
RP4-806M20.5
hsa-miR-182-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000603095
Biotype: lincRNA
Gene id: ENSG00000270279
Gene Name: RP4-806M20.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1574-1590
0.071
2
RP11-869B15.1
hsa-miR-182-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000598393
Biotype: lincRNA
Gene id: ENSG00000269290
Gene Name: RP11-869B15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-133
0.070
2
RP11-167N24.4
hsa-miR-182-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548194
Biotype: lincRNA
Gene id: ENSG00000257583
Gene Name: RP11-167N24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-276
0.067
5
6mer
166-193
0.004
0
XLOC_001501
hsa-miR-182-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002909
Biotype: transcript isomorph
Gene id: XLOC_001501
Gene Name: XLOC_001501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
224-235
0.066
4
6mer
58-74
0.004
1
PWAR6
hsa-miR-182-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000552334
Biotype: lincRNA
Gene id: ENSG00000257151
Gene Name: PWAR6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3038-3054
0.022
0
8mer
3338-3351
0.021
1
7mer
426-435
0.010
1
7mer
3909-3935
0.009
1
6mer
3848-3866
0.004
1
6mer
473-486
0.004
1
PSMD5-AS1
hsa-miR-182-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450803
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-129
0.070
2
AC125421.1
hsa-miR-182-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584660
Biotype: lincRNA
Gene id: ENSG00000234721
Gene Name: AC125421.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
570-596
0.062
0
6mer
342-369
0.004
2
6mer
635-659
0.004
0
RP4-535B20.4
hsa-miR-182-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000607528
Biotype: lincRNA
Gene id: ENSG00000272506
Gene Name: RP4-535B20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
407-422
0.069
2
RP11-744J10.3
hsa-miR-182-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517343
Biotype: lincRNA
Gene id: ENSG00000253479
Gene Name: RP11-744J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-141
0.037
2
8mer
731-753
0.032
1
XLOC_001543
hsa-miR-182-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002942
Biotype: transcript isomorph
Gene id: XLOC_001543
Gene Name: XLOC_001543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1068-1086
0.060
1
6mer
1186-1212
0.005
2
6mer
1161-1176
0.004
1
AC012494.1
hsa-miR-182-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439259
Biotype: lincRNA
Gene id: ENSG00000229494
Gene Name: AC012494.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
889-907
0.060
1
6mer
1007-1033
0.005
2
6mer
982-997
0.004
1
LINC01018
hsa-miR-182-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505626
Biotype: lincRNA
Gene id: ENSG00000250056
Gene Name: LINC01018
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2288-2299
0.040
1
8mer
535-552
0.028
1
RP11-379F4.4
hsa-miR-182-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607426
Biotype: antisense
Gene id: ENSG00000240207
Gene Name: RP11-379F4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2045-2063
0.041
1
7mer
163-178
0.027
1
RP11-1109M24.5
hsa-miR-182-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577956
Biotype: lincRNA
Gene id: ENSG00000264956
Gene Name: RP11-1109M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2184-2207
0.068
0
AL133243.2
hsa-miR-182-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000617415
Biotype: sense_intronic
Gene id: ENSG00000276517
Gene Name: AL133243.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2541-2561
0.030
2
8mer
400-421
0.030
1
7mer
1021-1044
0.007
1
RP11-444D3.1
hsa-miR-182-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538905
Biotype: lincRNA
Gene id: ENSG00000255864
Gene Name: RP11-444D3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-119
0.051
1
7mer
484-497
0.016
Not Conserved
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