LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
RP11-217B1.2
hsa-miR-182-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562356
Biotype: antisense
Gene id: ENSG00000261441
Gene Name: RP11-217B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
566-587
0.075
1
RP11-190J1.3
hsa-miR-182-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000458489
Biotype: lincRNA
Gene id: ENSG00000224817
Gene Name: RP11-190J1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-107
0.046
11
7mer
148-161
0.028
9
RP11-217B1.2
hsa-miR-182-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569473
Biotype: antisense
Gene id: ENSG00000261441
Gene Name: RP11-217B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1063-1084
0.073
1
6mer
390-408
0.002
0
XLOC_007543
hsa-miR-182-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016147
Biotype: transcript isomorph
Gene id: XLOC_007543
Gene Name: XLOC_007543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2089-2102
0.046
7
6mer
2050-2072
0.011
9
6mer
2207-2232
0.006
6
7mer
1521-1534
0.006
Not Conserved
7mer
1536-1550
0.006
Not Conserved
RP11-480C16.1
hsa-miR-182-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608834
Biotype: lincRNA
Gene id: ENSG00000272563
Gene Name: RP11-480C16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2651-2675
0.040
1
8mer
3283-3308
0.032
0
6mer
3047-3065
0.003
1
XLOC_002909
hsa-miR-182-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005388
Biotype: transcript isomorph
Gene id: XLOC_002909
Gene Name: XLOC_002909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1320-1346
0.043
10
8mer
1144-1171
0.015
7
7mer
2688-2706
0.011
0
7mer
1709-1735
0.004
2
XLOC_001200
hsa-miR-182-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001819
Biotype: transcript isomorph
Gene id: XLOC_001200
Gene Name: XLOC_001200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9359-9386
0.038
0
9mer
5964-5978
0.026
2
7mer
4013-4031
0.005
3
6mer
2599-2613
0.002
1
6mer
3920-3940
0.002
3
AC003973.4
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
672-699
0.038
0
7mer
928-938
0.035
0
RP11-555K2.4
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623559
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-359
0.073
1
RP11-121A8.1
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
188-203
0.073
1
AE000658.31
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000542992
Biotype: lincRNA
Gene id: ENSG00000248358
Gene Name: AE000658.31
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-397
0.073
2
ADAMTS9-AS2
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460833
Biotype: antisense
Gene id: ENSG00000241684
Gene Name: ADAMTS9-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3459-3473
0.066
8
6mer
3572-3594
0.006
3
RP11-882G5.1
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529088
Biotype: lincRNA
Gene id: ENSG00000255039
Gene Name: RP11-882G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
110-118
0.072
1
RP11-80F22.4
hsa-miR-182-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567902
Biotype: lincRNA
Gene id: ENSG00000261445
Gene Name: RP11-80F22.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-85
0.072
1
RP1-151F17.2
hsa-miR-182-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606924
Biotype: lincRNA
Gene id: ENSG00000272341
Gene Name: RP1-151F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
350-368
0.056
0
7mer
1713-1740
0.010
3
6mer
2151-2175
0.006
4
XLOC_013018
hsa-miR-182-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026966
Biotype: transcript isomorph
Gene id: XLOC_013018
Gene Name: XLOC_013018
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
142-151
0.072
1
RP11-139H15.7
hsa-miR-182-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616335
Biotype: sense_intronic
Gene id: ENSG00000274765
Gene Name: RP11-139H15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-162
0.067
3
6mer
274-293
0.005
0
PHEX-AS1
hsa-miR-182-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424650
Biotype: antisense
Gene id: ENSG00000224204
Gene Name: PHEX-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
263-279
0.059
3
7mer
1613-1634
0.013
1
RP13-143G15.4
hsa-miR-182-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591521
Biotype: antisense
Gene id: ENSG00000237596
Gene Name: RP13-143G15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
123-147
0.072
4
LINC01470
hsa-miR-182-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503048
Biotype: lincRNA
Gene id: ENSG00000249484
Gene Name: LINC01470
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18-45
0.043
2
7mer
114-135
0.024
0
6mer
47-61
0.004
0
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