LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
LINC00963
hsa-miR-182-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419300
Biotype: lincRNA
Gene id: ENSG00000204054
Gene Name: LINC00963
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2196-2219
0.065
9
8mer
606-633
0.016
0
RP11-79M19.2
hsa-miR-182-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000457948
Biotype: antisense
Gene id: ENSG00000236426
Gene Name: RP11-79M19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
254-281
0.080
5
AC006116.21
hsa-miR-182-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591036
Biotype: lincRNA
Gene id: ENSG00000267606
Gene Name: AC006116.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
344-359
0.080
1
RP11-159G9.5
hsa-miR-182-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000498458
Biotype: lincRNA
Gene id: ENSG00000229729
Gene Name: RP11-159G9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-516
0.079
9
XLOC_007065
hsa-miR-182-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014984
Biotype: transcript isomorph
Gene id: XLOC_007065
Gene Name: XLOC_007065
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-38
0.068
1
7mer
734-750
0.012
1
AF127577.10
hsa-miR-182-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000446301
Biotype: antisense
Gene id: ENSG00000229047
Gene Name: AF127577.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
373-396
0.079
6
LINC01330
hsa-miR-182-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000459923
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
729-749
0.041
10
8mer
701-728
0.028
7
7mer
1112-1138
0.010
2
ZRANB2-AS2
hsa-miR-182-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624050
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
180-205
0.078
1
CTA-796E4.5
hsa-miR-182-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31525-31548
0.013
2
8mer
9220-9236
0.009
1
6mer
82-104
0.006
1
7mer
22637-22659
0.006
3
6mer
490-505
0.006
1
7mer
30505-30530
0.006
1
7mer
18799-18821
0.005
1
6mer
30793-30807
0.003
1
6mer
7119-7140
0.003
5
7mer
23449-23469
0.003
0
6mer
13387-13402
0.002
0
6mer
20762-20777
0.002
1
6mer
25313-25331
0.002
1
6mer
20483-20507
0.002
1
6mer
11853-11866
0.002
0
6mer
13774-13785
0.002
1
6mer
17162-17175
0.002
1
6mer
24917-24939
0.002
1
6mer
3058-3078
0.002
2
6mer
29557-29573
0.002
1
RP13-143G15.4
hsa-miR-182-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000616427
Biotype: antisense
Gene id: ENSG00000237596
Gene Name: RP13-143G15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-125
0.078
4
XLOC_012209
hsa-miR-182-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025394
Biotype: transcript isomorph
Gene id: XLOC_012209
Gene Name: XLOC_012209
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
308-321
0.077
1
LOC339593
hsa-miR-182-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_038972.1
Biotype: lincRNA
Gene id: NR_038972.1 (gene)
Gene Name: LOC339593
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-182
0.071
5
6mer
2199-2213
0.004
0
6mer
1684-1711
0.002
1
XLOC_012999
hsa-miR-182-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027503
Biotype: transcript isomorph
Gene id: XLOC_012999
Gene Name: XLOC_012999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-33
0.060
0
7mer
143-164
0.017
0
RP11-11C20.3
hsa-miR-182-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000605991
Biotype: lincRNA
Gene id: ENSG00000272076
Gene Name: RP11-11C20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-375
0.070
5
6mer
157-181
0.006
1
CTD-2506P8.6
hsa-miR-182-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000618431
Biotype: antisense
Gene id: ENSG00000273783
Gene Name: CTD-2506P8.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
458-479
0.066
1
7mer
869-893
0.010
Not Conserved
RP11-672F9.1
hsa-miR-182-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450980
Biotype: lincRNA
Gene id: ENSG00000226113
Gene Name: RP11-672F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
102-126
0.076
3
XLOC_001548
hsa-miR-182-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003750
Biotype: transcript isomorph
Gene id: XLOC_001548
Gene Name: XLOC_001548
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
557-579
0.076
3
PSMD5-AS1
hsa-miR-182-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000586423
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-40
0.076
2
LINC00964
hsa-miR-182-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027321.1
Biotype: lincRNA
Gene id: NR_027321.1 (gene)
Gene Name: LINC00964
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
882-901
0.045
1
8mer
25-51
0.030
1
RP11-322E11.2
hsa-miR-182-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612496
Biotype: lincRNA
Gene id: ENSG00000275512
Gene Name: RP11-322E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1410-1420
0.061
1
7mer
1827-1853
0.014
1
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