LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CTC-338M12.4
hsa-miR-182-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000599439
Biotype: retained_intron
Gene id: ENSG00000233937
Gene Name: CTC-338M12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
399-420
0.085
3
6mer
1528-1547
0.005
1
XLOC_002530
hsa-miR-182-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004621
Biotype: transcript isomorph
Gene id: XLOC_002530
Gene Name: XLOC_002530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
17-40
0.077
3
7mer
56-79
0.013
0
AC009299.2
hsa-miR-182-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435692
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-366
0.063
12
7mer
391-408
0.026
8
RP11-555K2.4
hsa-miR-182-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000624226
Biotype: lincRNA
Gene id: ENSG00000279321
Gene Name: RP11-555K2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
498-513
0.090
1
RP11-111F5.3
hsa-miR-182-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438072
Biotype: lincRNA
Gene id: ENSG00000231212
Gene Name: RP11-111F5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-200
0.066
1
7mer
276-299
0.023
0
AC093901.1
hsa-miR-182-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449819
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
226-237
0.082
10
6mer
309-329
0.005
2
XLOC_008237
hsa-miR-182-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017372
Biotype: transcript isomorph
Gene id: XLOC_008237
Gene Name: XLOC_008237
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
75-85
0.070
0
6mer
434-450
0.017
1
RP3-340N1.2
hsa-miR-182-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417884
Biotype: lincRNA
Gene id: ENSG00000227066
Gene Name: RP3-340N1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1024-1048
0.051
1
6mer
1049-1071
0.018
1
7mer
992-1016
0.018
0
NKX2-1-AS1
hsa-miR-182-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000521292
Biotype: antisense
Gene id: ENSG00000253563
Gene Name: NKX2-1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
161-175
0.086
9
RP11-814H16.2
hsa-miR-182-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608029
Biotype: lincRNA
Gene id: ENSG00000272862
Gene Name: RP11-814H16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-110
0.085
3
XLOC_006001
hsa-miR-182-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012869
Biotype: transcript isomorph
Gene id: XLOC_006001
Gene Name: XLOC_006001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-337
0.082
9
6mer
365-381
0.003
1
AC003986.6
hsa-miR-182-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419944
Biotype: antisense
Gene id: ENSG00000232821
Gene Name: AC003986.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-337
0.082
9
6mer
365-381
0.003
1
XLOC_002517
hsa-miR-182-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002680
Biotype: transcript isomorph
Gene id: XLOC_002517
Gene Name: XLOC_002517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
580-603
0.064
2
8mer
248-263
0.020
1
AC006548.28
hsa-miR-182-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
891-915
0.015
Not Conserved
8mer
35537-35556
0.010
0
8mer
20796-20818
0.005
1
7mer
81041-81055
0.005
1
7mer
67544-67570
0.004
Not Conserved
7mer
70071-70097
0.003
0
7mer
11248-11263
0.003
0
7mer
69160-69175
0.003
0
7mer
38562-38582
0.002
1
6mer
83323-83341
0.002
0
6mer
19166-19190
0.002
3
6mer
47580-47600
0.002
Not Conserved
6mer
5414-5441
0.002
1
6mer
38784-38801
0.002
3
7mer
15321-15330
0.002
0
6mer
48348-48358
0.002
Not Conserved
6mer
71137-71148
0.002
0
6mer
41125-41149
0.002
2
6mer
59449-59468
0.002
0
6mer
48016-48032
0.002
Not Conserved
6mer
50821-50835
0.001
Not Conserved
6mer
60611-60635
0.001
0
6mer
14202-14225
0.001
1
6mer
61525-61551
0.001
1
6mer
3669-3694
0.001
1
6mer
13332-13342
0.001
1
6mer
51094-51110
0.001
Not Conserved
6mer
41703-41722
0.001
1
6mer
8308-8324
0.001
1
6mer
69070-69090
0.001
Not Conserved
6mer
14080-14101
0.001
1
6mer
41693-41708
0.001
1
RP3-323A16.1
hsa-miR-182-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17224-17244
0.024
5
9mer
12413-12427
0.009
0
7mer
28787-28800
0.006
0
7mer
26903-26924
0.005
1
7mer
30066-30084
0.004
0
7mer
6743-6759
0.004
0
7mer
26042-26062
0.004
1
7mer
4376-4397
0.004
0
7mer
51317-51332
0.002
1
6mer
6590-6604
0.002
0
6mer
19587-19607
0.002
1
6mer
8242-8265
0.002
Not Conserved
6mer
49429-49456
0.002
0
6mer
25128-25153
0.002
1
6mer
6198-6219
0.002
0
6mer
28252-28269
0.001
1
6mer
15053-15069
0.001
1
6mer
24333-24352
0.001
1
6mer
28438-28459
0.001
1
6mer
48559-48577
0.001
1
6mer
4872-4899
0.001
0
6mer
12867-12893
0.001
1
6mer
17358-17383
0.001
2
6mer
28312-28322
0.001
0
KIAA0087
hsa-miR-182-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-348
0.077
9
6mer
1863-1878
0.003
8
6mer
3738-3759
0.003
1
CTD-2043I16.1
hsa-miR-182-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590229
Biotype: lincRNA
Gene id: ENSG00000267509
Gene Name: CTD-2043I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
71-96
0.082
1
XLOC_006312
hsa-miR-182-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013655
Biotype: transcript isomorph
Gene id: XLOC_006312
Gene Name: XLOC_006312
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
433-452
0.082
0
SPATA3-AS1
hsa-miR-182-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414876
Biotype: lincRNA
Gene id: ENSG00000238062
Gene Name: SPATA3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
581-604
0.062
2
8mer
249-264
0.020
1
XLOC_009307
hsa-miR-182-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019509
Biotype: transcript isomorph
Gene id: XLOC_009307
Gene Name: XLOC_009307
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-62
0.082
0
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