LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
CTC-459F4.3
hsa-miR-182-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-616
0.121
0
AC009299.2
hsa-miR-182-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000610254
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-168
0.083
12
7mer
193-210
0.033
8
RP11-443B7.2
hsa-miR-182-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000423963
Biotype: lincRNA
Gene id: ENSG00000237520
Gene Name: RP11-443B7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-70
0.114
6
AC009299.2
hsa-miR-182-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609940
Biotype: antisense
Gene id: ENSG00000235724
Gene Name: AC009299.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-179
0.086
12
7mer
359-376
0.027
8
RP1-28O17.1
hsa-miR-182-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454135
Biotype: lincRNA
Gene id: ENSG00000230472
Gene Name: RP1-28O17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
120-135
0.111
8
XLOC_011789
hsa-miR-182-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024467
Biotype: transcript isomorph
Gene id: XLOC_011789
Gene Name: XLOC_011789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3234-3256
0.080
7
8mer
1781-1804
0.027
4
6mer
1945-1959
0.002
2
XLOC_002002
hsa-miR-182-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004156
Biotype: transcript isomorph
Gene id: XLOC_002002
Gene Name: XLOC_002002
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
116-133
0.101
6
6mer
220-240
0.006
2
LINC01330
hsa-miR-182-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493529
Biotype: lincRNA
Gene id: ENSG00000244227
Gene Name: LINC01330
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-271
0.106
10
XLOC_012288
hsa-miR-182-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025471
Biotype: transcript isomorph
Gene id: XLOC_012288
Gene Name: XLOC_012288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2657-2679
0.046
0
9mer
657-670
0.024
0
9mer
1953-1973
0.021
0
6mer
126-145
0.007
0
7mer
2067-2081
0.005
0
6mer
664-681
0.003
0
MIR6818
hsa-miR-182-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49015-49033
0.015
1
8mer
26671-26695
0.012
2
7mer
31472-31496
0.010
5
7mer
49056-49072
0.008
5
7mer
35393-35418
0.007
1
7mer
33296-33304
0.006
1
7mer
2944-2960
0.006
1
7mer
38012-38031
0.005
1
7mer
43912-43933
0.005
1
8mer
8837-8858
0.004
0
6mer
39814-39827
0.002
3
7mer
8694-8710
0.002
1
6mer
12540-12560
0.002
5
6mer
1347-1360
0.002
3
6mer
8515-8534
0.002
3
6mer
11512-11534
0.002
3
6mer
1189-1203
0.002
0
7mer
11038-11065
0.002
Not Conserved
6mer
15241-15251
0.002
1
6mer
19801-19825
0.002
2
6mer
28523-28544
0.001
2
6mer
20783-20807
0.001
0
6mer
26635-26648
0.001
4
6mer
4938-4955
0.001
Not Conserved
6mer
41421-41444
0.001
Not Conserved
7mer
8792-8815
0.001
1
CTD-2165H16.4
hsa-miR-182-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000563101
Biotype: antisense
Gene id: ENSG00000261360
Gene Name: CTD-2165H16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
433-457
0.055
0
9mer
677-697
0.042
1
7mer
1356-1370
0.004
0
6mer
1207-1229
0.002
1
XLOC_003038
hsa-miR-182-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
84-94
0.053
0
7mer
288-301
0.047
0
LINC00173
hsa-miR-182-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000480237
Biotype: lincRNA
Gene id: ENSG00000196668
Gene Name: LINC00173
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
677-702
0.098
10
CTD-2043I16.1
hsa-miR-182-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586671
Biotype: lincRNA
Gene id: ENSG00000267509
Gene Name: CTD-2043I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
71-96
0.097
1
HOXA10-HOXA9
hsa-miR-182-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-45
0.091
7
6mer
724-746
0.003
2
AC093901.1
hsa-miR-182-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414886
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
546-557
0.080
10
7mer
195-216
0.009
0
6mer
629-649
0.005
2
CTD-2303H24.2
hsa-miR-182-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581595
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-255
0.049
3
7mer
94-113
0.045
3
RP11-338L18.1
hsa-miR-182-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473893
Biotype: lincRNA
Gene id: ENSG00000242012
Gene Name: RP11-338L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-79
0.093
8
AC093901.1
hsa-miR-182-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449075
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-319
0.088
10
6mer
444-464
0.005
2
FAM201A
hsa-miR-182-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377680
Biotype: antisense
Gene id: ENSG00000204860
Gene Name: FAM201A
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1416-1441
0.092
1
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