LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-182-5p


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Gene
miRNA
Score
DIANA Links
XLOC_008705
hsa-miR-182-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017683
Biotype: transcript isomorph
Gene id: XLOC_008705
Gene Name: XLOC_008705
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1618-1639
0.028
0
8mer
1408-1433
0.019
1
7mer
1589-1608
0.007
1
6mer
1012-1034
0.002
0
HMGN3-AS1
hsa-miR-182-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000604516
Biotype: antisense
Gene id: ENSG00000270362
Gene Name: HMGN3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2628-2651
0.052
2
6mer
168-182
0.004
2
GPR158-AS1
hsa-miR-182-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449643
Biotype: antisense
Gene id: ENSG00000233642
Gene Name: GPR158-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
48-75
0.056
0
LINC00551
hsa-miR-182-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607593
Biotype: lincRNA
Gene id: ENSG00000272274
Gene Name: LINC00551
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1440-1467
0.048
1
6mer
365-386
0.004
0
6mer
249-271
0.004
2
RP11-248J18.2
hsa-miR-182-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602954
Biotype: sense_intronic
Gene id: ENSG00000269906
Gene Name: RP11-248J18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-162
0.056
Not Conserved
RP11-15H20.6
hsa-miR-182-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598053
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
156-182
0.056
1
AP000344.3
hsa-miR-182-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428415
Biotype: lincRNA
Gene id: ENSG00000234928
Gene Name: AP000344.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
109-121
0.056
1
XLOC_013495
hsa-miR-182-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028137
Biotype: transcript isomorph
Gene id: XLOC_013495
Gene Name: XLOC_013495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1328-1352
0.048
1
6mer
9-31
0.006
1
6mer
1614-1639
0.002
1
RP11-15H20.6
hsa-miR-182-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598323
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
173-199
0.056
1
RP11-586K12.10
hsa-miR-182-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570084
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
313-335
0.056
0
XLOC_010052
hsa-miR-182-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020760
Biotype: transcript isomorph
Gene id: XLOC_010052
Gene Name: XLOC_010052
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
850-871
0.033
0
7mer
139-155
0.023
2
LINC01102
hsa-miR-182-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451400
Biotype: lincRNA
Gene id: ENSG00000235597
Gene Name: LINC01102
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3458-3476
0.035
1
9mer
2404-2417
0.013
1
7mer
1522-1535
0.005
0
7mer
1768-1780
0.003
1
RP11-724N1.1
hsa-miR-182-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610034
Biotype: lincRNA
Gene id: ENSG00000272912
Gene Name: RP11-724N1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-590
0.050
1
6mer
83-101
0.005
1
STX18-AS1
hsa-miR-182-5p
0.939
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000610009
Biotype: antisense
Gene id: ENSG00000247708
Gene Name: STX18-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2373-2400
0.042
6
7mer
1582-1594
0.013
7
XLOC_012878
hsa-miR-182-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026557
Biotype: transcript isomorph
Gene id: XLOC_012878
Gene Name: XLOC_012878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-66
0.026
0
6mer
9-35
0.017
1
6mer
59-82
0.012
1
LINC00293
hsa-miR-182-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027013.1
Biotype: lincRNA
Gene id: NR_027013.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
949-969
0.027
0
6mer
335-348
0.014
1
7mer
733-760
0.014
0
ZNF385D-AS2
hsa-miR-182-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000448980
Biotype: lincRNA
Gene id: ENSG00000223351
Gene Name: ZNF385D-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-257
0.055
0
XLOC_007401
hsa-miR-182-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016011
Biotype: transcript isomorph
Gene id: XLOC_007401
Gene Name: XLOC_007401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1694-1719
0.055
1
RP11-576E20.1
hsa-miR-182-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509964
Biotype: lincRNA
Gene id: ENSG00000250819
Gene Name: RP11-576E20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
479-505
0.045
2
6mer
1186-1211
0.010
8
RP11-618G20.1
hsa-miR-182-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555937
Biotype: processed_transcript
Gene id: ENSG00000258964
Gene Name: RP11-618G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-182-5p
Sequence: uuuggcaaugguagaacucacacu
MirBase ID: MIMAT0000259
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-49
0.055
7
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