LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-255C15.3
hsa-miR-181a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000569932
Biotype: lincRNA
Gene id: ENSG00000260743
Gene Name: RP11-255C15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1478-1500
0.045
1
RP11-367F23.1
hsa-miR-181a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000427745
Biotype: lincRNA
Gene id: ENSG00000228216
Gene Name: RP11-367F23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
35-56
0.045
1
XLOC_005164
hsa-miR-181a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011688
Biotype: transcript isomorph
Gene id: XLOC_005164
Gene Name: XLOC_005164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1304-1327
0.025
0
8mer
2555-2575
0.010
Not Conserved
7mer
3832-3849
0.010
2
XLOC_010123
hsa-miR-181a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020213
Biotype: transcript isomorph
Gene id: XLOC_010123
Gene Name: XLOC_010123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1840-1866
0.015
0
7mer
1600-1617
0.015
1
8mer
1165-1180
0.007
2
6mer
2602-2623
0.007
5
XLOC_014361
hsa-miR-181a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029901
Biotype: transcript isomorph
Gene id: XLOC_014361
Gene Name: XLOC_014361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-150
0.045
4
XXbac-BPGBPG55C20.2
hsa-miR-181a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-81
0.032
1
6mer
89-104
0.006
0
6mer
4587-4610
0.003
0
7mer
3235-3256
0.003
1
XLOC_003228
hsa-miR-181a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007245
Biotype: transcript isomorph
Gene id: XLOC_003228
Gene Name: XLOC_003228
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-355
0.040
2
6mer
1136-1155
0.002
0
6mer
1081-1098
0.002
1
6mer
974-995
0.001
0
AC079779.5
hsa-miR-181a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588842
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-580
0.033
2
6mer
89-107
0.007
3
6mer
278-296
0.004
1
OR7E47P
hsa-miR-181a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000575924
Biotype: sense_intronic
Gene id: ENSG00000272724
Gene Name: OR7E47P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-367
0.044
3
RP11-346C4.3
hsa-miR-181a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000622038
Biotype: lincRNA
Gene id: ENSG00000274718
Gene Name: RP11-346C4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
130-156
0.012
6
6mer
2969-2980
0.006
1
6mer
206-226
0.006
3
6mer
2870-2890
0.006
1
7mer
1421-1442
0.005
0
6mer
2411-2436
0.004
3
6mer
1876-1903
0.003
1
6mer
1624-1643
0.002
1
XLOC_006976
hsa-miR-181a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014909
Biotype: transcript isomorph
Gene id: XLOC_006976
Gene Name: XLOC_006976
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-291
0.015
0
6mer
2445-2467
0.012
1
7mer
1098-1120
0.011
Not Conserved
6mer
2330-2349
0.006
0
ALG1L9P
hsa-miR-181a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525473
Biotype: processed_transcript
Gene id: ENSG00000248671
Gene Name: ALG1L9P
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-244
0.044
1
RP11-711K1.8
hsa-miR-181a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612592
Biotype: lincRNA
Gene id: ENSG00000275119
Gene Name: RP11-711K1.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
409-431
0.023
0
6mer
46-71
0.018
0
6mer
282-304
0.003
Not Conserved
LINC01198
hsa-miR-181a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000595532
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-112
0.028
0
6mer
668-672
0.006
0
6mer
787-809
0.006
0
6mer
539-559
0.004
0
SLC8A1-AS1
hsa-miR-181a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439606
Biotype: antisense
Gene id: ENSG00000227028
Gene Name: SLC8A1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-307
0.035
1
6mer
427-454
0.009
3
XLOC_004467
hsa-miR-181a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010037
Biotype: transcript isomorph
Gene id: XLOC_004467
Gene Name: XLOC_004467
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-321
0.018
0
7mer
808-830
0.017
1
7mer
2445-2468
0.005
1
6mer
179-200
0.004
1
PEX5L-AS1
hsa-miR-181a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466064
Biotype: antisense
Gene id: ENSG00000243799
Gene Name: PEX5L-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-101
0.044
7
RP11-704J17.5
hsa-miR-181a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606160
Biotype: lincRNA
Gene id: ENSG00000272428
Gene Name: RP11-704J17.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-279
0.037
1
6mer
27-52
0.006
2
RP11-94L15.2
hsa-miR-181a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000488188
Biotype: lincRNA
Gene id: ENSG00000264198
Gene Name: RP11-94L15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5894-5911
0.013
3
7mer
1339-1366
0.006
4
6mer
5571-5590
0.005
3
7mer
2438-2443
0.004
3
7mer
2934-2954
0.004
2
6mer
366-391
0.003
1
6mer
884-910
0.003
0
7mer
2919-2941
0.002
2
6mer
3710-3731
0.002
3
6mer
1246-1273
0.002
3
RP11-101E13.5
hsa-miR-181a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608166
Biotype: antisense
Gene id: ENSG00000272579
Gene Name: RP11-101E13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
450-471
0.027
5
7mer
436-460
0.017
2
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