LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-356O9.1
hsa-miR-181a-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554829
Biotype: lincRNA
Gene id: ENSG00000258414
Gene Name: RP11-356O9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-83
0.047
8
RP11-166B2.3
hsa-miR-181a-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
385-410
0.036
0
6mer
1288-1302
0.007
0
6mer
216-236
0.004
1
GS1-278J22.2
hsa-miR-181a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412800
Biotype: lincRNA
Gene id: ENSG00000228627
Gene Name: GS1-278J22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-200
0.047
1
AC000403.4
hsa-miR-181a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000613696
Biotype: lincRNA
Gene id: ENSG00000278727
Gene Name: AC000403.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
507-527
0.015
1
8mer
137-163
0.014
1
6mer
3201-3222
0.006
1
7mer
2059-2085
0.005
1
6mer
2979-2992
0.004
1
7mer
1674-1698
0.003
0
RP11-21I10.2
hsa-miR-181a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514608
Biotype: lincRNA
Gene id: ENSG00000249356
Gene Name: RP11-21I10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-91
0.039
0
6mer
701-718
0.007
0
ZSCAN16-AS1
hsa-miR-181a-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602810
Biotype: antisense
Gene id: ENSG00000269293
Gene Name: ZSCAN16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1174-1198
0.024
1
6mer
163-176
0.022
5
XLOC_008033
hsa-miR-181a-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017441
Biotype: transcript isomorph
Gene id: XLOC_008033
Gene Name: XLOC_008033
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1061-1087
0.028
1
9mer
1296-1323
0.010
1
6mer
818-840
0.005
1
6mer
1124-1149
0.002
1
6mer
1323-1335
0.001
0
MIR4458HG
hsa-miR-181a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606459
Biotype: lincRNA
Gene id: ENSG00000247516
Gene Name: MIR4458HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
885-901
0.020
0
8mer
645-663
0.014
1
6mer
2384-2409
0.004
1
6mer
700-720
0.004
1
6mer
1285-1306
0.003
1
6mer
2122-2142
0.001
0
DLX6-AS1
hsa-miR-181a-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-95
0.025
1
8mer
10389-10412
0.009
5
6mer
14781-14804
0.004
2
7mer
10233-10249
0.003
3
6mer
12324-12349
0.001
Not Conserved
6mer
2307-2333
0.001
Not Conserved
6mer
2544-2568
0.001
Not Conserved
6mer
8499-8518
0.001
1
6mer
12030-12051
0.001
0
XLOC_012348
hsa-miR-181a-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00026002
Biotype: transcript isomorph
Gene id: XLOC_012348
Gene Name: XLOC_012348
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-130
0.046
1
RP11-74C3.1
hsa-miR-181a-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000452685
Biotype: lincRNA
Gene id: ENSG00000224935
Gene Name: RP11-74C3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-62
0.046
1
MUC19
hsa-miR-181a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000543564
Biotype: retained_intron
Gene id: ENSG00000205592
Gene Name: MUC19
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
540-555
0.023
8
6mer
481-498
0.015
11
7mer
621-636
0.008
2
LL22NC03-22D1.1
hsa-miR-181a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17182-17199
0.009
2
7mer
9358-9381
0.005
4
6mer
792-796
0.004
1
7mer
12006-12028
0.004
0
8mer
19043-19064
0.003
1
6mer
3137-3161
0.003
0
6mer
15117-15141
0.002
1
6mer
8535-8545
0.002
2
6mer
4507-4527
0.002
2
6mer
9941-9958
0.002
0
6mer
8228-8249
0.002
1
6mer
16453-16478
0.001
1
6mer
7462-7480
0.001
0
6mer
3681-3708
0.001
0
6mer
8545-8569
0.001
1
6mer
10068-10078
0.001
0
6mer
3284-3304
0.001
0
6mer
3225-3246
0.001
0
6mer
15152-15177
0.001
1
6mer
3239-3257
0.001
0
KB-1183D5.13
hsa-miR-181a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000416405
Biotype: lincRNA
Gene id: ENSG00000206142
Gene Name: KB-1183D5.13
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-31
0.042
1
6mer
580-594
0.004
0
XLOC_011950
hsa-miR-181a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024662
Biotype: transcript isomorph
Gene id: XLOC_011950
Gene Name: XLOC_011950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
955-975
0.021
3
7mer
49-68
0.018
1
6mer
2014-2039
0.003
2
6mer
1865-1880
0.002
4
6mer
1924-1948
0.002
1
RP11-52L5.6
hsa-miR-181a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607269
Biotype: antisense
Gene id: ENSG00000271776
Gene Name: RP11-52L5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3415-3439
0.018
12
6mer
3317-3336
0.010
8
7mer
3248-3264
0.009
0
6mer
2579-2595
0.006
7
6mer
814-831
0.002
1
XLOC_010799
hsa-miR-181a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022470
Biotype: transcript isomorph
Gene id: XLOC_010799
Gene Name: XLOC_010799
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-317
0.045
11
MIR4534
hsa-miR-181a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
8751-8777
0.022
2
7mer
8544-8568
0.003
1
6mer
10988-11010
0.003
9
7mer
42156-42178
0.003
2
7mer
1348-1371
0.002
0
6mer
3803-3824
0.001
Not Conserved
6mer
51092-51108
0.001
3
6mer
17914-17930
0.001
1
6mer
50443-50465
0.001
3
6mer
24160-24179
0.001
3
6mer
43596-43614
0.001
1
6mer
5685-5703
0.001
1
6mer
46473-46494
0.001
Not Conserved
6mer
38092-38113
0.001
1
6mer
12425-12448
0.001
Not Conserved
LCMT1-AS2
hsa-miR-181a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565214
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1808-1825
0.020
0
6mer
5471-5496
0.013
1
6mer
2305-2332
0.007
1
7mer
3607-3627
0.005
0
CRNDE
hsa-miR-181a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000559598
Biotype: lincRNA
Gene id: ENSG00000245694
Gene Name: CRNDE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-50
0.040
3
6mer
558-583
0.004
2
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