LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-392P7.7
hsa-miR-181a-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545158
Biotype: antisense
Gene id: ENSG00000256011
Gene Name: RP11-392P7.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-57
0.053
1
AGAP11
hsa-miR-181a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-286
0.023
1
9mer
3690-3707
0.011
0
7mer
978-1003
0.007
0
6mer
4388-4409
0.007
1
6mer
4089-4110
0.004
2
RP11-10E18.7
hsa-miR-181a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000622881
Biotype: sense_intronic
Gene id: ENSG00000276809
Gene Name: RP11-10E18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-126
0.023
Not Conserved
7mer
337-359
0.013
2
6mer
449-472
0.009
2
6mer
865-882
0.006
0
RP11-274H2.5
hsa-miR-181a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000567714
Biotype: sense_overlapping
Gene id: ENSG00000261051
Gene Name: RP11-274H2.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-273
0.038
3
6mer
124-150
0.013
5
ZNF625-ZNF20
hsa-miR-181a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037802.1
Biotype: sense
Gene id: NR_037802.1 (gene)
Gene Name: ZNF625-ZNF20
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
527-541
0.009
0
7mer
2067-2093
0.007
0
7mer
1899-1922
0.006
1
7mer
1395-1418
0.005
0
6mer
315-341
0.004
0
7mer
1647-1672
0.004
1
6mer
2394-2414
0.003
1
6mer
802-828
0.003
0
7mer
1563-1586
0.003
1
6mer
2310-2327
0.002
2
7mer
1815-1838
0.002
1
6mer
780-802
0.002
0
6mer
2058-2077
0.001
3
6mer
1638-1652
0.001
1
RP11-404F10.2
hsa-miR-181a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621431
Biotype: antisense
Gene id: ENSG00000228863
Gene Name: RP11-404F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-356
0.044
1
6mer
377-401
0.007
2
XLOC_013267
hsa-miR-181a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027229
Biotype: transcript isomorph
Gene id: XLOC_013267
Gene Name: XLOC_013267
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-214
0.051
0
LINC00506
hsa-miR-181a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_104153.1
Biotype: lincRNA
Gene id: NR_104153.1 (gene)
Gene Name: LINC00506
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-550
0.051
1
AC016745.3
hsa-miR-181a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422178
Biotype: antisense
Gene id: ENSG00000234997
Gene Name: AC016745.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
393-416
0.034
0
6mer
306-318
0.011
2
6mer
321-340
0.005
0
LINC01183
hsa-miR-181a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514853
Biotype: lincRNA
Gene id: ENSG00000230561
Gene Name: LINC01183
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
966-987
0.051
1
GAS5-AS1
hsa-miR-181a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602767
Biotype: antisense
Gene id: ENSG00000270084
Gene Name: GAS5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
556-581
0.051
1
RP11-523G9.3
hsa-miR-181a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608133
Biotype: lincRNA
Gene id: ENSG00000273193
Gene Name: RP11-523G9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-417
0.050
3
RP11-645C24.5
hsa-miR-181a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567370
Biotype: lincRNA
Gene id: ENSG00000260306
Gene Name: RP11-645C24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1358-1376
0.047
4
6mer
468-491
0.003
Not Conserved
XLOC_003261
hsa-miR-181a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006665
Biotype: transcript isomorph
Gene id: XLOC_003261
Gene Name: XLOC_003261
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3156-3181
0.039
1
8mer
2318-2340
0.009
0
6mer
1522-1546
0.002
1
SEPT7-AS1
hsa-miR-181a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000437235
Biotype: lincRNA
Gene id: ENSG00000228878
Gene Name: SEPT7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-107
0.029
0
7mer
171-194
0.010
1
7mer
2051-2072
0.004
0
6mer
527-550
0.003
1
7mer
1331-1357
0.002
Not Conserved
6mer
2172-2187
0.001
Not Conserved
FAM66C
hsa-miR-181a-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
241-250
0.019
0
6mer
486-510
0.018
0
6mer
106-125
0.013
0
XLOC_012724
hsa-miR-181a-5p
0.914
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026372
Biotype: transcript isomorph
Gene id: XLOC_012724
Gene Name: XLOC_012724
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-217
0.044
8
6mer
1976-2002
0.005
0
LINC00163
hsa-miR-181a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000439088
Biotype: lincRNA
Gene id: ENSG00000234880
Gene Name: LINC00163
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
56-74
0.048
0
6mer
1832-1856
0.002
Not Conserved
CTC-529P8.1
hsa-miR-181a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507318
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2469-2483
0.015
0
8mer
666-693
0.014
1
7mer
830-848
0.009
3
6mer
328-340
0.005
2
6mer
1166-1193
0.003
1
6mer
2323-2346
0.003
0
RP11-266K4.14
hsa-miR-181a-5p
0.913
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000618256
Biotype: lincRNA
Gene id: ENSG00000275367
Gene Name: RP11-266K4.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2003-2029
0.018
0
6mer
440-459
0.011
1
7mer
2947-2968
0.011
0
6mer
75-97
0.009
0
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