LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-363G2.4
hsa-miR-181a-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1942-1962
0.058
0
XLOC_001668
hsa-miR-181a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5584-5595
0.027
1
7mer
4933-4947
0.012
1
6mer
570-589
0.012
1
6mer
4460-4480
0.006
1
RP11-476K15.1
hsa-miR-181a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583163
Biotype: lincRNA
Gene id: ENSG00000266602
Gene Name: RP11-476K15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
551-573
0.043
1
6mer
673-697
0.008
2
6mer
446-461
0.005
0
CCAT2
hsa-miR-181a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_109834.1
Biotype: lincRNA
Gene id: NR_109834.1 (gene)
Gene Name: CCAT2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1643-1668
0.056
4
N4BP2L2-IT2
hsa-miR-181a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_026928.1
Biotype: sense
Gene id: NR_026928.1 (gene)
Gene Name: N4BP2L2-IT2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1245-1265
0.017
1
7mer
363-390
0.015
1
9mer
1099-1124
0.010
1
6mer
37-55
0.005
1
8mer
2226-2248
0.005
0
6mer
1825-1848
0.003
2
RP11-263K4.3
hsa-miR-181a-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548575
Biotype: lincRNA
Gene id: ENSG00000257431
Gene Name: RP11-263K4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-418
0.037
3
7mer
577-598
0.009
4
6mer
2978-3001
0.006
0
6mer
348-373
0.004
1
IPW
hsa-miR-181a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_023915.1
Biotype: lincRNA
Gene id: NR_023915.1 (gene)
Gene Name: IPW
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-536
0.019
2
8mer
989-1008
0.010
1
8mer
1753-1764
0.010
1
6mer
3809-3830
0.006
2
6mer
2310-2332
0.004
4
6mer
617-640
0.004
1
6mer
3249-3274
0.003
1
XLOC_011185
hsa-miR-181a-5p
0.940
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023184
Biotype: transcript isomorph
Gene id: XLOC_011185
Gene Name: XLOC_011185
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
517-536
0.019
2
8mer
989-1008
0.010
1
8mer
1753-1764
0.010
1
6mer
3809-3830
0.006
2
6mer
2310-2332
0.004
4
6mer
617-640
0.004
1
6mer
3249-3274
0.003
1
RP1-309I22.2
hsa-miR-181a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11290-11313
0.007
0
7mer
26234-26250
0.006
10
6mer
26152-26175
0.005
11
6mer
28210-28236
0.005
7
7mer
23457-23482
0.005
4
9mer
17051-17069
0.005
1
7mer
16043-16068
0.003
3
6mer
9329-9347
0.002
4
6mer
27966-27985
0.002
1
6mer
20761-20781
0.002
1
6mer
13393-13414
0.002
0
6mer
22289-22301
0.002
3
6mer
19401-19416
0.001
2
6mer
10574-10597
0.001
1
6mer
8870-8892
0.001
1
6mer
26254-26278
0.001
9
6mer
4636-4656
0.001
1
7mer
19402-19429
0.001
1
6mer
2593-2606
0.001
1
RP11-105C19.2
hsa-miR-181a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567401
Biotype: lincRNA
Gene id: ENSG00000260973
Gene Name: RP11-105C19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1359-1377
0.051
7
6mer
468-491
0.004
0
XLOC_004270
hsa-miR-181a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009857
Biotype: transcript isomorph
Gene id: XLOC_004270
Gene Name: XLOC_004270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3772-3783
0.031
1
7mer
4068-4091
0.009
0
6mer
3997-4013
0.007
1
7mer
2954-2981
0.003
1
6mer
1024-1039
0.003
2
6mer
3116-3143
0.001
0
RP11-404F10.2
hsa-miR-181a-5p
0.936
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443928
Biotype: antisense
Gene id: ENSG00000228863
Gene Name: RP11-404F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
974-999
0.047
1
6mer
1020-1044
0.007
2
LINC01347
hsa-miR-181a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411733
Biotype: retained_intron
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
314-335
0.054
1
RP11-404F10.2
hsa-miR-181a-5p
0.935
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588034
Biotype: antisense
Gene id: ENSG00000228863
Gene Name: RP11-404F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
319-344
0.047
1
6mer
365-389
0.007
2
TSIX
hsa-miR-181a-5p
0.933
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29106-29129
0.011
1
7mer
34122-34136
0.004
0
7mer
30936-30961
0.003
1
6mer
33556-33573
0.003
4
7mer
20454-20473
0.003
3
6mer
22233-22255
0.003
3
6mer
20802-20820
0.003
3
7mer
13711-13737
0.003
Not Conserved
7mer
5692-5711
0.002
2
6mer
29612-29631
0.002
3
6mer
30139-30150
0.002
2
7mer
12342-12362
0.002
Not Conserved
6mer
28756-28782
0.002
2
6mer
31809-31829
0.002
1
6mer
27763-27779
0.002
1
6mer
4783-4805
0.002
0
6mer
6907-6933
0.002
0
6mer
29389-29406
0.001
1
6mer
8910-8933
0.001
0
6mer
14963-14985
0.001
Not Conserved
AC079779.5
hsa-miR-181a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591178
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
111-131
0.053
2
RP11-588G21.2
hsa-miR-181a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501387
Biotype: antisense
Gene id: ENSG00000247131
Gene Name: RP11-588G21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1810-1836
0.020
0
7mer
1570-1587
0.018
1
8mer
1135-1150
0.008
2
6mer
2325-2346
0.007
5
LINC00486
hsa-miR-181a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_027099.1
Biotype: lincRNA
Gene id: NR_027099.1 (gene)
Gene Name: LINC00486
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-140
0.053
4
AC079779.5
hsa-miR-181a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592090
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-66
0.053
2
AC009299.3
hsa-miR-181a-5p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439050
Biotype: lincRNA
Gene id: ENSG00000227403
Gene Name: AC009299.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1881-1896
0.033
7
7mer
2089-2098
0.010
3
6mer
699-726
0.006
5
6mer
360-373
0.004
2
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