LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-496I2.2
hsa-miR-181a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000551932
Biotype: lincRNA
Gene id: ENSG00000257310
Gene Name: RP11-496I2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-55
0.047
5
6mer
73-98
0.007
2
6mer
306-324
0.006
0
6mer
608-634
0.005
3
6mer
1794-1805
0.004
2
7mer
1898-1914
0.004
1
RP11-508N22.12
hsa-miR-181a-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000608335
Biotype: lincRNA
Gene id: ENSG00000272983
Gene Name: RP11-508N22.12
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-305
0.029
1
6mer
6864-6884
0.012
1
6mer
459-478
0.009
1
6mer
5347-5369
0.005
1
6mer
1266-1287
0.005
1
6mer
5083-5101
0.004
1
6mer
3063-3082
0.003
1
6mer
4305-4327
0.003
0
6mer
3408-3422
0.002
0
6mer
2676-2690
0.001
Not Conserved
AC091814.3
hsa-miR-181a-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420905
Biotype: lincRNA
Gene id: ENSG00000231560
Gene Name: AC091814.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-85
0.068
0
6mer
491-517
0.005
1
RP11-707A18.1
hsa-miR-181a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509932
Biotype: lincRNA
Gene id: ENSG00000250125
Gene Name: RP11-707A18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
61-85
0.041
1
7mer
77-98
0.010
0
6mer
103-107
0.007
2
7mer
2599-2626
0.005
1
6mer
1076-1094
0.003
1
7mer
2119-2130
0.002
1
6mer
2282-2305
0.002
1
6mer
1935-1962
0.001
Not Conserved
RP11-429B14.4
hsa-miR-181a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567484
Biotype: lincRNA
Gene id: ENSG00000261478
Gene Name: RP11-429B14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1400-1421
0.009
1
6mer
462-477
0.007
1
6mer
394-407
0.006
1
6mer
428-441
0.006
1
6mer
44-57
0.005
Not Conserved
6mer
76-89
0.005
Not Conserved
6mer
108-121
0.004
Not Conserved
6mer
140-153
0.004
Not Conserved
6mer
362-377
0.004
0
6mer
172-185
0.004
Not Conserved
6mer
204-217
0.004
Not Conserved
6mer
266-279
0.004
Not Conserved
6mer
231-249
0.004
Not Conserved
6mer
330-343
0.003
Not Conserved
6mer
298-311
0.003
Not Conserved
XLOC_003971
hsa-miR-181a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007371
Biotype: transcript isomorph
Gene id: XLOC_003971
Gene Name: XLOC_003971
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
60-84
0.041
1
7mer
76-97
0.010
0
6mer
102-106
0.007
2
7mer
2598-2625
0.005
1
6mer
1075-1093
0.003
1
7mer
2118-2129
0.002
1
6mer
2281-2304
0.002
1
6mer
1934-1961
0.001
Not Conserved
XLOC_002026
hsa-miR-181a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00005117
Biotype: transcript isomorph
Gene id: XLOC_002026
Gene Name: XLOC_002026
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
69-85
0.071
8
CTC-255N20.1
hsa-miR-181a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504297
Biotype: antisense
Gene id: ENSG00000250343
Gene Name: CTC-255N20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-109
0.066
1
6mer
473-499
0.005
3
XLOC_013998
hsa-miR-181a-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029076
Biotype: transcript isomorph
Gene id: XLOC_013998
Gene Name: XLOC_013998
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-205
0.064
1
6mer
436-449
0.006
0
RP11-268E23.2
hsa-miR-181a-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609508
Biotype: lincRNA
Gene id: ENSG00000273370
Gene Name: RP11-268E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-268
0.070
5
ZNF833P
hsa-miR-181a-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000344893
Biotype: lincRNA
Gene id: ENSG00000197332
Gene Name: ZNF833P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2718-2744
0.020
0
7mer
2967-2990
0.013
0
7mer
2136-2159
0.009
0
7mer
483-509
0.008
0
7mer
2472-2495
0.007
0
7mer
2304-2327
0.005
0
6mer
857-882
0.003
0
6mer
2979-2999
0.003
0
6mer
2397-2420
0.002
0
6mer
2484-2504
0.002
1
CASC7
hsa-miR-181a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6567-6585
0.017
10
7mer
8939-8960
0.014
6
8mer
8431-8453
0.011
1
6mer
7568-7591
0.006
10
6mer
659-686
0.005
6
7mer
5337-5350
0.004
2
6mer
3359-3383
0.003
6
6mer
8059-8080
0.003
3
6mer
8306-8332
0.002
1
6mer
4052-4069
0.002
0
XLOC_007528
hsa-miR-181a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016134
Biotype: transcript isomorph
Gene id: XLOC_007528
Gene Name: XLOC_007528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
545-570
0.039
0
8mer
852-877
0.020
0
7mer
5535-5561
0.007
4
6mer
3029-3051
0.002
2
RP5-1021I20.2
hsa-miR-181a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555539
Biotype: lincRNA
Gene id: ENSG00000258586
Gene Name: RP5-1021I20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
94-118
0.022
0
8mer
729-744
0.017
1
7mer
902-916
0.013
2
6mer
229-251
0.005
0
6mer
40-56
0.005
1
6mer
398-420
0.003
Not Conserved
XLOC_013703
hsa-miR-181a-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1828-1847
0.048
0
6mer
1999-2025
0.017
0
XLOC_010367
hsa-miR-181a-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021771
Biotype: transcript isomorph
Gene id: XLOC_010367
Gene Name: XLOC_010367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-114
0.033
7
8mer
62-88
0.032
5
RP11-403N16.3
hsa-miR-181a-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000565707
Biotype: lincRNA
Gene id: ENSG00000260564
Gene Name: RP11-403N16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
392-411
0.027
8
6mer
2159-2173
0.011
9
6mer
2288-2313
0.008
8
6mer
2716-2737
0.006
3
7mer
990-1017
0.005
0
6mer
2399-2417
0.004
3
6mer
1211-1234
0.002
0
6mer
1901-1921
0.002
1
6mer
1245-1265
0.001
3
XLOC_010463
hsa-miR-181a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3066-3092
0.020
0
8mer
11154-11175
0.018
1
8mer
1262-1287
0.007
1
7mer
1218-1244
0.005
2
6mer
819-837
0.003
1
6mer
10007-10031
0.003
2
6mer
1531-1552
0.002
0
6mer
9226-9253
0.002
2
6mer
4892-4916
0.002
1
6mer
6298-6322
0.001
0
RP4-671O14.7
hsa-miR-181a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
61-85
0.017
1
9mer
2922-2943
0.011
0
7mer
19022-19037
0.009
1
7mer
6025-6040
0.008
Not Conserved
7mer
11649-11671
0.004
1
8mer
17344-17365
0.004
1
6mer
988-1012
0.003
1
6mer
17567-17585
0.002
1
6mer
16074-16099
0.002
1
6mer
4502-4518
0.002
1
6mer
1608-1626
0.001
0
6mer
15981-16006
0.001
Not Conserved
KCNIP4-IT1
hsa-miR-181a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_002813.1
Biotype: sense
Gene id: NR_002813.1 (gene)
Gene Name: KCNIP4-IT1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9359-9375
0.019
0
8mer
3234-3251
0.011
1
7mer
9699-9720
0.011
0
9mer
572-594
0.009
0
6mer
627-649
0.004
2
6mer
4730-4757
0.003
4
6mer
7538-7562
0.002
1
6mer
5362-5387
0.002
1
6mer
5211-5234
0.002
2
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