LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-181a-5p


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Gene
miRNA
Score
DIANA Links
RP11-215G15.5
hsa-miR-181a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607560
Biotype: lincRNA
Gene id: ENSG00000272016
Gene Name: RP11-215G15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3185-3204
0.025
5
6mer
3459-3476
0.010
5
6mer
3489-3515
0.006
1
XLOC_011482
hsa-miR-181a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023278
Biotype: transcript isomorph
Gene id: XLOC_011482
Gene Name: XLOC_011482
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-305
0.027
2
6mer
30-53
0.006
3
7mer
1290-1314
0.003
0
6mer
4529-4555
0.003
2
6mer
1900-1922
0.003
1
RP11-736E3.1
hsa-miR-181a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441928
Biotype: lincRNA
Gene id: ENSG00000225457
Gene Name: RP11-736E3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-164
0.042
1
RP11-297M9.2
hsa-miR-181a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562861
Biotype: lincRNA
Gene id: ENSG00000260432
Gene Name: RP11-297M9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
781-794
0.009
5
7mer
3582-3606
0.006
1
7mer
4206-4227
0.006
1
7mer
3380-3401
0.006
1
8mer
734-747
0.004
1
7mer
1947-1969
0.002
1
6mer
2493-2518
0.002
1
6mer
1178-1196
0.002
1
6mer
2151-2174
0.002
3
6mer
3270-3291
0.001
1
6mer
2319-2338
0.001
0
RP11-388P9.2
hsa-miR-181a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000619719
Biotype: antisense
Gene id: ENSG00000232682
Gene Name: RP11-388P9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-266
0.042
6
RP11-408A13.4
hsa-miR-181a-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000610061
Biotype: lincRNA
Gene id: ENSG00000272871
Gene Name: RP11-408A13.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
892-917
0.028
1
7mer
305-325
0.014
1
CRNDE
hsa-miR-181a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000502066
Biotype: lincRNA
Gene id: ENSG00000245694
Gene Name: CRNDE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-44
0.037
3
6mer
552-577
0.005
2
LINC01205
hsa-miR-181a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000489670
Biotype: lincRNA
Gene id: ENSG00000228980
Gene Name: LINC01205
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
219-235
0.037
0
6mer
406-420
0.005
0
RP11-76I14.1
hsa-miR-181a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000545549
Biotype: lincRNA
Gene id: ENSG00000256637
Gene Name: RP11-76I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-424
0.033
7
7mer
378-396
0.009
2
RP11-298O21.7
hsa-miR-181a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000464514
Biotype: lincRNA
Gene id: ENSG00000244214
Gene Name: RP11-298O21.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
460-482
0.042
2
NEAT1
hsa-miR-181a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3125-3150
0.011
2
7mer
7334-7358
0.005
1
7mer
1063-1088
0.004
3
6mer
20234-20256
0.004
4
6mer
5096-5118
0.003
3
8mer
21225-21244
0.003
Not Conserved
6mer
15242-15259
0.002
4
6mer
10505-10516
0.002
0
6mer
12343-12367
0.002
1
6mer
1299-1325
0.002
0
6mer
17071-17094
0.002
0
6mer
4141-4159
0.001
2
6mer
12889-12913
0.001
0
6mer
9771-9792
0.001
Not Conserved
XLOC_007035
hsa-miR-181a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5594-5616
0.010
Not Conserved
7mer
10312-10338
0.004
1
7mer
1618-1641
0.004
0
7mer
4147-4165
0.003
1
6mer
2251-2266
0.003
1
6mer
9048-9066
0.002
1
6mer
18173-18197
0.002
0
6mer
6129-6149
0.002
1
6mer
7123-7148
0.002
0
6mer
13277-13298
0.002
Not Conserved
6mer
12893-12904
0.002
0
6mer
14847-14870
0.002
0
6mer
2211-2231
0.001
3
6mer
12508-12519
0.001
0
6mer
16563-16577
0.001
Not Conserved
6mer
9032-9047
0.001
0
ARHGEF26-AS1
hsa-miR-181a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000611093
Biotype: retained_intron
Gene id: ENSG00000243069
Gene Name: ARHGEF26-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
235-259
0.034
0
6mer
957-984
0.008
3
CRNDE
hsa-miR-181a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501177
Biotype: lincRNA
Gene id: ENSG00000245694
Gene Name: CRNDE
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-51
0.037
3
6mer
476-501
0.005
2
RP11-67H2.1
hsa-miR-181a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518558
Biotype: lincRNA
Gene id: ENSG00000253207
Gene Name: RP11-67H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-64
0.017
2
9mer
376-389
0.016
0
6mer
506-518
0.009
1
XLOC_005753
hsa-miR-181a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012196
Biotype: transcript isomorph
Gene id: XLOC_005753
Gene Name: XLOC_005753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-227
0.026
1
6mer
4182-4205
0.005
0
6mer
235-250
0.005
0
7mer
3381-3402
0.005
1
RP11-983P16.4
hsa-miR-181a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549388
Biotype: antisense
Gene id: ENSG00000257337
Gene Name: RP11-983P16.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-49
0.041
4
LINC00561
hsa-miR-181a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000565815
Biotype: lincRNA
Gene id: ENSG00000261206
Gene Name: LINC00561
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-543
0.018
3
7mer
295-319
0.011
Not Conserved
6mer
746-758
0.006
3
6mer
2035-2053
0.003
0
6mer
1378-1396
0.003
1
LINC01227
hsa-miR-181a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561719
Biotype: lincRNA
Gene id: ENSG00000260737
Gene Name: LINC01227
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-545
0.041
1
TRG-AS1
hsa-miR-181a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_040085.1
Biotype: lincRNA
Gene id: NR_040085.1 (gene)
Gene Name: TRG-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-181a-5p
Sequence: aacauucaacgcugucggugagu
MirBase ID: MIMAT0000256
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3442-3458
0.022
2
9mer
145-165
0.013
0
6mer
2438-2463
0.002
1
6mer
1533-1559
0.002
1
6mer
1551-1576
0.001
0
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