LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
LINC01135
hsa-miR-17-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000419531
Biotype: lincRNA
Gene id: ENSG00000234807
Gene Name: LINC01135
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
872-896
0.048
4
6mer
772-797
0.003
0
CTB-89H12.4
hsa-miR-17-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-585
0.026
10
6mer
535-557
0.008
10
6mer
143-159
0.008
6
9mer
6992-7016
0.006
1
6mer
7304-7323
0.002
0
7mer
3779-3803
0.001
0
PROX1-AS1
hsa-miR-17-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433082
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
615-638
0.030
1
8mer
1948-1967
0.011
1
7mer
4303-4325
0.005
1
6mer
680-692
0.003
1
6mer
3677-3699
0.001
0
6mer
1918-1941
0.001
3
RP5-1014D13.2
hsa-miR-17-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6187-6213
0.014
1
7mer
5027-5045
0.004
0
9mer
10159-10179
0.003
0
9mer
7505-7524
0.003
0
9mer
11200-11220
0.003
0
7mer
6883-6907
0.002
Not Conserved
9mer
6586-6613
0.002
0
9mer
5893-5917
0.002
0
7mer
4521-4548
0.002
1
9mer
7171-7192
0.002
0
9mer
3091-3111
0.002
0
6mer
8185-8206
0.002
1
7mer
9512-9532
0.002
0
6mer
12245-12259
0.002
2
7mer
9777-9801
0.001
0
6mer
16091-16118
0.001
0
7mer
6264-6284
0.001
0
UXT-AS1
hsa-miR-17-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000590504
Biotype: antisense
Gene id: ENSG00000267064
Gene Name: UXT-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-29
0.051
7
RP11-348J24.2
hsa-miR-17-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2621-2640
0.036
1
6mer
2063-2083
0.004
2
6mer
2727-2746
0.004
1
7mer
1134-1155
0.004
1
6mer
1626-1647
0.002
1
NAMA
hsa-miR-17-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_102271.1
Biotype: lincRNA
Gene id: NR_102271.1 (gene)
Gene Name: NAMA
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1204-1224
0.051
8
LOC100129917
hsa-miR-17-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036512.1
Biotype: lincRNA
Gene id: NR_036512.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-326
0.051
1
RP11-440L14.1
hsa-miR-17-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503185
Biotype: antisense
Gene id: ENSG00000249592
Gene Name: RP11-440L14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-326
0.051
1
LOC100129917
hsa-miR-17-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-326
0.050
1
RP11-206L10.9
hsa-miR-17-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000591440
Biotype: lincRNA
Gene id: ENSG00000237491
Gene Name: RP11-206L10.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
717-740
0.044
1
6mer
146-166
0.006
1
LINC00293
hsa-miR-17-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521715
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1362-1387
0.033
1
7mer
539-565
0.017
0
RP3-412A9.17
hsa-miR-17-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1769-1789
0.010
1
9mer
394-418
0.006
0
9mer
16277-16297
0.006
Not Conserved
8mer
8688-8711
0.005
1
7mer
13468-13483
0.004
1
7mer
12832-12853
0.004
1
9mer
9784-9808
0.003
0
7mer
10050-10072
0.002
0
7mer
879-903
0.002
0
9mer
4752-4772
0.002
0
6mer
15018-15040
0.002
1
7mer
11952-11972
0.002
0
7mer
2540-2559
0.001
0
RP11-361F15.2
hsa-miR-17-5p
0.917
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1095-1107
0.019
4
7mer
150-173
0.013
1
6mer
1234-1253
0.011
8
6mer
722-748
0.004
5
6mer
914-928
0.003
1
PWARSN
hsa-miR-17-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_022011.1
Biotype: sense
Gene id: NR_022011.1 (gene)
Gene Name: PWARSN
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-177
0.026
2
6mer
116-141
0.011
3
9mer
1537-1556
0.008
0
8mer
1136-1156
0.004
0
AC073133.1
hsa-miR-17-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000436670
Biotype: lincRNA
Gene id: ENSG00000233878
Gene Name: AC073133.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-161
0.050
6
RP11-909M7.3
hsa-miR-17-5p
0.916
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_110178.1
Biotype: lincRNA
Gene id: NR_110178.1 (gene)
Gene Name: RP11-909M7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-900
0.030
1
7mer
712-729
0.020
0
RP11-799D4.4
hsa-miR-17-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000588697
Biotype: antisense
Gene id: ENSG00000266947
Gene Name: RP11-799D4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
261-285
0.050
1
RP11-111F5.3
hsa-miR-17-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000448491
Biotype: lincRNA
Gene id: ENSG00000231212
Gene Name: RP11-111F5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
451-467
0.028
1
6mer
459-485
0.022
1
AP000487.4
hsa-miR-17-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000324630
Biotype: antisense
Gene id: ENSG00000254495
Gene Name: AP000487.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-20
0.042
1
7mer
200-224
0.008
1
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