LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP13-991F5.2
hsa-miR-17-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582249
Biotype: antisense
Gene id: ENSG00000266445
Gene Name: RP13-991F5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
107-127
0.053
0
7mer
688-712
0.020
0
7mer
395-421
0.018
0
AC002519.8
hsa-miR-17-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570073
Biotype: sense_intronic
Gene id: ENSG00000259810
Gene Name: AC002519.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2057-2077
0.051
1
9mer
1133-1157
0.028
1
7mer
723-741
0.009
0
CTD-2015H6.3
hsa-miR-17-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508000
Biotype: antisense
Gene id: ENSG00000249042
Gene Name: CTD-2015H6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-492
0.058
2
9mer
837-857
0.012
1
7mer
339-360
0.010
1
6mer
92-110
0.009
1
XLOC_007078
hsa-miR-17-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014998
Biotype: transcript isomorph
Gene id: XLOC_007078
Gene Name: XLOC_007078
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-577
0.047
1
7mer
33-60
0.025
1
7mer
322-336
0.014
0
XLOC_000199
hsa-miR-17-5p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1979-2003
0.059
1
6mer
957-976
0.016
1
6mer
604-624
0.012
1
RP3-323A16.1
hsa-miR-17-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53936-53959
0.006
1
9mer
38888-38907
0.004
1
9mer
10831-10855
0.004
1
9mer
28235-28259
0.004
1
8mer
19372-19388
0.004
Not Conserved
9mer
36600-36619
0.004
1
8mer
44778-44797
0.004
0
7mer
10104-10119
0.004
0
6mer
20384-20398
0.003
3
7mer
40257-40277
0.003
1
9mer
3006-3024
0.003
1
7mer
40191-40213
0.003
1
6mer
14829-14845
0.003
2
7mer
42744-42763
0.003
1
7mer
47826-47849
0.002
1
6mer
25697-25715
0.002
1
6mer
53560-53586
0.002
0
6mer
18913-18936
0.002
1
7mer
1289-1310
0.002
Not Conserved
7mer
11782-11801
0.002
1
6mer
50512-50532
0.002
1
6mer
45992-46008
0.002
1
6mer
9820-9838
0.002
1
6mer
39886-39904
0.002
1
6mer
32855-32879
0.002
0
7mer
35236-35256
0.002
0
6mer
2035-2044
0.002
1
6mer
5848-5868
0.001
0
9mer
47950-47970
0.001
0
6mer
27072-27086
0.001
1
6mer
47094-47110
0.001
1
6mer
20161-20182
0.001
Not Conserved
7mer
11849-11862
0.001
1
6mer
40438-40460
0.001
1
6mer
19350-19376
0.001
Not Conserved
7mer
17537-17561
0.001
Not Conserved
CTA-221G9.11
hsa-miR-17-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
848-872
0.063
0
7mer
154-174
0.023
0
XLOC_012755
hsa-miR-17-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026408
Biotype: transcript isomorph
Gene id: XLOC_012755
Gene Name: XLOC_012755
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
35-55
0.066
0
6mer
284-308
0.018
0
LOC101929319
hsa-miR-17-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110248.1
Biotype: antisense
Gene id: NR_110248.1 (gene)
Gene Name: LOC101929319
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
524-541
0.040
1
8mer
372-388
0.039
1
6mer
1439-1447
0.004
1
PVRL3-AS1
hsa-miR-17-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467426
Biotype: antisense
Gene id: ENSG00000242242
Gene Name: PVRL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
603-623
0.082
6
XLOC_007765
hsa-miR-17-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016396
Biotype: transcript isomorph
Gene id: XLOC_007765
Gene Name: XLOC_007765
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-197
0.066
1
6mer
322-347
0.015
1
MIR6818
hsa-miR-17-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
27872-27895
0.006
0
7mer
19534-19559
0.005
0
9mer
5130-5154
0.005
1
7mer
13653-13679
0.005
Not Conserved
6mer
9603-9616
0.004
13
8mer
32675-32694
0.004
1
6mer
15619-15638
0.003
5
9mer
18048-18067
0.003
1
9mer
11895-11915
0.003
1
9mer
4948-4972
0.003
1
9mer
10538-10558
0.003
0
6mer
5772-5788
0.003
3
6mer
2529-2533
0.003
4
6mer
33713-33733
0.003
5
6mer
24396-24417
0.002
3
6mer
15071-15087
0.002
1
6mer
18422-18447
0.002
1
6mer
23994-24013
0.002
5
6mer
6056-6067
0.002
0
6mer
15991-16012
0.002
1
6mer
42324-42350
0.002
1
7mer
4492-4516
0.002
1
6mer
16605-16620
0.002
0
6mer
7473-7492
0.002
0
6mer
9551-9570
0.001
8
6mer
20644-20670
0.001
1
6mer
34118-34138
0.001
0
7mer
46477-46495
0.001
0
6mer
47494-47518
0.001
2
6mer
32428-32440
0.001
0
6mer
46600-46622
0.001
1
6mer
20094-20114
0.001
2
RP11-466F5.10
hsa-miR-17-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608512
Biotype: lincRNA
Gene id: ENSG00000273365
Gene Name: RP11-466F5.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-37
0.076
1
6mer
650-667
0.004
0
AC006548.28
hsa-miR-17-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2339-2357
0.007
0
6mer
326-346
0.006
1
8mer
59328-59342
0.006
1
8mer
2177-2199
0.006
1
9mer
63298-63317
0.005
1
8mer
71556-71577
0.004
Not Conserved
6mer
112-129
0.004
1
9mer
81628-81648
0.003
1
9mer
66882-66906
0.003
Not Conserved
8mer
41577-41595
0.003
0
6mer
28257-28283
0.002
0
6mer
36097-36116
0.002
4
7mer
24819-24824
0.002
0
7mer
51927-51948
0.002
Not Conserved
6mer
41050-41069
0.002
1
6mer
73712-73733
0.002
1
6mer
16543-16560
0.002
1
6mer
55725-55744
0.002
0
6mer
15921-15944
0.002
3
6mer
59469-59493
0.002
1
6mer
72927-72953
0.002
0
6mer
67658-67684
0.002
0
6mer
68803-68818
0.001
0
6mer
16952-16965
0.001
0
6mer
51565-51585
0.001
Not Conserved
6mer
55343-55361
0.001
0
7mer
36841-36868
0.001
1
6mer
23289-23304
0.001
1
7mer
75137-75162
0.001
0
6mer
38121-38140
0.001
1
6mer
12105-12125
0.001
1
6mer
35981-36007
0.001
1
RP11-374M1.2
hsa-miR-17-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000443347
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-176
0.080
1
PCAT19
hsa-miR-17-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
30-50
0.051
1
6mer
760-779
0.014
1
6mer
982-1008
0.013
1
XLOC_001668
hsa-miR-17-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003870
Biotype: transcript isomorph
Gene id: XLOC_001668
Gene Name: XLOC_001668
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
5159-5179
0.043
1
9mer
5637-5656
0.018
0
6mer
2383-2407
0.007
1
6mer
3691-3710
0.005
1
6mer
3136-3161
0.003
0
RP11-809F4.3
hsa-miR-17-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
401-424
0.066
1
6mer
872-899
0.010
1
LINC01204
hsa-miR-17-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000609127
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2233-2258
0.043
3
8mer
1931-1949
0.019
0
7mer
2330-2343
0.007
4
6mer
1830-1855
0.004
2
6mer
2368-2382
0.003
0
HAND2-AS1
hsa-miR-17-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503198
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2392-2416
0.053
7
6mer
2118-2137
0.009
6
6mer
2197-2216
0.005
4
6mer
2370-2395
0.005
Not Conserved
6mer
242-262
0.003
1
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