LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
SCGB1B2P
hsa-miR-15a-5p
0.926
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595013
Biotype: lincRNA
Gene id: ENSG00000268751
Gene Name: SCGB1B2P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-137
0.031
2
7mer
468-484
0.014
1
6mer
460-484
0.004
0
6mer
483-501
0.003
0
RP11-114G22.1
hsa-miR-15a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000590955
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
125-147
0.024
5
7mer
111-134
0.020
4
6mer
199-224
0.008
4
TMEM108-AS1
hsa-miR-15a-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2133-2158
0.040
5
7mer
334-354
0.009
1
6mer
416-439
0.004
0
RP11-575I8.1
hsa-miR-15a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000562922
Biotype: lincRNA
Gene id: ENSG00000260390
Gene Name: RP11-575I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2049-2068
0.052
1
MAGI2-AS3
hsa-miR-15a-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414797
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-686
0.033
1
7mer
563-579
0.010
0
6mer
320-338
0.005
3
6mer
767-779
0.004
0
XLOC_013305
hsa-miR-15a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026763
Biotype: transcript isomorph
Gene id: XLOC_013305
Gene Name: XLOC_013305
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-136
0.031
2
7mer
467-483
0.013
1
6mer
459-483
0.004
0
6mer
482-500
0.003
0
LINC01184
hsa-miR-15a-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508353
Biotype: lincRNA
Gene id: ENSG00000245937
Gene Name: LINC01184
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
304-319
0.051
2
RP11-299J3.8
hsa-miR-15a-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608756
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
926-952
0.028
13
7mer
963-983
0.023
9
DLGAP1-AS3
hsa-miR-15a-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000583571
Biotype: antisense
Gene id: ENSG00000263724
Gene Name: DLGAP1-AS3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
177-189
0.024
2
7mer
476-496
0.023
1
6mer
373-388
0.004
0
RP11-179A10.1
hsa-miR-15a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525758
Biotype: lincRNA
Gene id: ENSG00000254401
Gene Name: RP11-179A10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
310-330
0.044
2
6mer
197-214
0.003
0
6mer
954-973
0.002
0
6mer
700-715
0.002
Not Conserved
EAF1-AS1
hsa-miR-15a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597949
Biotype: antisense
Gene id: ENSG00000249786
Gene Name: EAF1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-234
0.023
11
7mer
210-234
0.012
8
6mer
223-242
0.010
11
6mer
325-349
0.005
7
GS1-358P8.4
hsa-miR-15a-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4218-4236
0.017
5
7mer
4488-4506
0.011
1
8mer
4016-4036
0.010
0
7mer
4249-4265
0.007
2
6mer
721-745
0.003
1
6mer
857-871
0.002
1
RP11-556O9.2
hsa-miR-15a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582889
Biotype: antisense
Gene id: ENSG00000264513
Gene Name: RP11-556O9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-136
0.047
9
6mer
341-366
0.004
0
RP11-436F21.1
hsa-miR-15a-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421507
Biotype: lincRNA
Gene id: ENSG00000226566
Gene Name: RP11-436F21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-244
0.050
Not Conserved
MAGI2-AS3
hsa-miR-15a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448195
Biotype: antisense
Gene id: ENSG00000234456
Gene Name: MAGI2-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-548
0.041
1
6mer
268-286
0.005
3
6mer
629-641
0.004
0
LINC01203
hsa-miR-15a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456091
Biotype: lincRNA
Gene id: ENSG00000226985
Gene Name: LINC01203
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
360-382
0.050
2
XLOC_011979
hsa-miR-15a-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024700
Biotype: transcript isomorph
Gene id: XLOC_011979
Gene Name: XLOC_011979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-260
0.050
4
XLOC_007035
hsa-miR-15a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014956
Biotype: transcript isomorph
Gene id: XLOC_007035
Gene Name: XLOC_007035
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
18124-18147
0.030
0
7mer
1439-1465
0.007
1
7mer
10498-10521
0.004
0
6mer
11148-11167
0.002
1
6mer
11464-11468
0.002
0
6mer
4389-4413
0.002
1
6mer
8413-8440
0.001
1
6mer
3040-3055
0.001
0
RP4-671O14.6
hsa-miR-15a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
510-535
0.008
2
8mer
13192-13211
0.008
1
8mer
683-700
0.007
0
7mer
1830-1854
0.005
1
8mer
12176-12198
0.005
0
6mer
402-417
0.003
1
7mer
8860-8876
0.002
4
7mer
3482-3499
0.002
1
6mer
10442-10465
0.002
2
6mer
9117-9134
0.002
1
6mer
8740-8753
0.001
1
6mer
6108-6124
0.001
0
6mer
1327-1348
0.001
1
6mer
12358-12374
0.001
1
6mer
8029-8045
0.001
1
6mer
7425-7442
0.001
1
6mer
9161-9182
0.000
0
XLOC_005077
hsa-miR-15a-5p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010550
Biotype: transcript isomorph
Gene id: XLOC_005077
Gene Name: XLOC_005077
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
651-671
0.017
1
9mer
1604-1631
0.013
0
7mer
310-332
0.012
0
7mer
6279-6295
0.008
1
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