LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009911
hsa-miR-15a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021223
Biotype: transcript isomorph
Gene id: XLOC_009911
Gene Name: XLOC_009911
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
100-127
0.060
2
EGFLAM-AS2
hsa-miR-15a-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000514377
Biotype: antisense
Gene id: ENSG00000248572
Gene Name: EGFLAM-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-112
0.040
1
7mer
95-112
0.020
1
RP11-166D19.1
hsa-miR-15a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531381
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2833-2851
0.055
7
6mer
2551-2570
0.003
2
6mer
2478-2497
0.002
3
SOX9-AS1
hsa-miR-15a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443037
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
75-98
0.023
1
7mer
332-347
0.015
3
7mer
78-98
0.011
1
7mer
330-347
0.008
2
6mer
189-214
0.004
1
XLOC_001751
hsa-miR-15a-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003048
Biotype: transcript isomorph
Gene id: XLOC_001751
Gene Name: XLOC_001751
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-536
0.048
1
6mer
1390-1415
0.007
1
6mer
1624-1644
0.005
0
RP11-350G24.1
hsa-miR-15a-5p
0.952
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549036
Biotype: antisense
Gene id: ENSG00000258007
Gene Name: RP11-350G24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-145
0.044
2
7mer
124-145
0.016
2
FGF14-IT1
hsa-miR-15a-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437115
Biotype: sense_intronic
Gene id: ENSG00000243319
Gene Name: FGF14-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1211-1231
0.027
3
7mer
1197-1207
0.025
9
7mer
1600-1616
0.007
1
RP3-508I15.20
hsa-miR-15a-5p
0.950
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609428
Biotype: sense_intronic
Gene id: ENSG00000273096
Gene Name: RP3-508I15.20
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-176
0.059
1
RP11-16C1.3
hsa-miR-15a-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585081
Biotype: antisense
Gene id: ENSG00000265987
Gene Name: RP11-16C1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-324
0.058
1
RP11-214K3.24
hsa-miR-15a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621669
Biotype: lincRNA
Gene id: ENSG00000275389
Gene Name: RP11-214K3.24
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2702-2728
0.052
1
6mer
505-527
0.004
1
GS1-304P7.3
hsa-miR-15a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609032
Biotype: lincRNA
Gene id: ENSG00000273198
Gene Name: GS1-304P7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
468-486
0.057
1
ATXN8OS
hsa-miR-15a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000414504
Biotype: antisense
Gene id: ENSG00000230223
Gene Name: ATXN8OS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1089-1110
0.005
Not Conserved
7mer
1101-1125
0.005
Not Conserved
7mer
1128-1137
0.004
Not Conserved
7mer
1125-1134
0.004
Not Conserved
7mer
1122-1131
0.004
Not Conserved
7mer
1089-1113
0.004
Not Conserved
7mer
1119-1128
0.004
Not Conserved
7mer
1131-1140
0.004
Not Conserved
7mer
1134-1143
0.004
Not Conserved
7mer
1095-1122
0.004
Not Conserved
7mer
1092-1116
0.004
Not Conserved
7mer
1095-1119
0.004
Not Conserved
7mer
1137-1146
0.004
Not Conserved
6mer
124-150
0.003
1
AC005540.3
hsa-miR-15a-5p
0.945
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413911
Biotype: antisense
Gene id: ENSG00000235852
Gene Name: AC005540.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
82-91
0.006
1
7mer
79-88
0.005
1
7mer
97-106
0.005
0
7mer
91-100
0.005
0
7mer
88-97
0.004
0
7mer
85-94
0.004
0
7mer
94-103
0.004
0
7mer
100-109
0.004
0
7mer
103-128
0.004
Not Conserved
7mer
106-132
0.003
Not Conserved
8mer
118-139
0.003
Not Conserved
7mer
109-135
0.003
Not Conserved
7mer
115-139
0.003
Not Conserved
7mer
112-139
0.003
Not Conserved
FLJ22447
hsa-miR-15a-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000229465
Biotype: lincRNA
Gene id: ENSG00000232774
Gene Name: FLJ22447
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1153-1168
0.040
0
8mer
70-88
0.014
3
6mer
402-414
0.003
1
RP11-359B12.2
hsa-miR-15a-5p
0.942
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503602
Biotype: antisense
Gene id: ENSG00000250132
Gene Name: RP11-359B12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-88
0.033
1
7mer
418-444
0.008
0
8mer
3107-3132
0.006
Not Conserved
7mer
2322-2340
0.004
0
6mer
2357-2378
0.003
1
6mer
1549-1572
0.002
2
PCAT19
hsa-miR-15a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594315
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
951-966
0.016
0
6mer
1007-1023
0.016
1
6mer
803-819
0.015
1
6mer
256-273
0.008
0
AP000473.6
hsa-miR-15a-5p
0.938
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444868
Biotype: lincRNA
Gene id: ENSG00000237735
Gene Name: AP000473.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-155
0.055
0
MCM3AP-AS1
hsa-miR-15a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000414659
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2384-2411
0.028
0
7mer
1638-1659
0.014
0
8mer
517-543
0.011
1
6mer
514-540
0.003
3
AC005537.2
hsa-miR-15a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000588324
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-424
0.055
0
CTC-490G23.4
hsa-miR-15a-5p
0.937
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000607109
Biotype: antisense
Gene id: ENSG00000272396
Gene Name: CTC-490G23.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
405-426
0.036
Not Conserved
7mer
116-135
0.019
0
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