LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP4-761J14.8
hsa-miR-15a-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000396799
Biotype: antisense
Gene id: ENSG00000219410
Gene Name: RP4-761J14.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1290-1299
0.009
7
7mer
1284-1293
0.006
5
7mer
1287-1296
0.006
5
7mer
1240-1263
0.005
0
7mer
1252-1278
0.005
4
7mer
1251-1275
0.004
3
7mer
1248-1266
0.004
1
6mer
812-838
0.004
6
7mer
1248-1269
0.004
2
7mer
1281-1290
0.004
1
7mer
1275-1284
0.003
1
7mer
1272-1281
0.003
1
7mer
1248-1272
0.003
1
7mer
1278-1287
0.003
0
7mer
1382-1403
0.002
0
7mer
1382-1400
0.002
Not Conserved
6mer
1378-1397
0.002
1
XLOC_011480
hsa-miR-15a-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024123
Biotype: transcript isomorph
Gene id: XLOC_011480
Gene Name: XLOC_011480
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-106
0.069
1
MIR6818
hsa-miR-15a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46781-46806
0.012
6
7mer
39932-39957
0.005
0
7mer
46428-46449
0.004
0
6mer
40662-40677
0.003
10
7mer
46405-46420
0.003
3
7mer
31191-31216
0.003
1
6mer
7137-7160
0.002
3
6mer
587-602
0.002
1
7mer
25941-25966
0.002
0
6mer
15702-15724
0.002
1
6mer
29669-29684
0.002
1
6mer
24362-24381
0.002
4
6mer
2003-2024
0.002
1
6mer
46740-46758
0.002
13
6mer
7397-7423
0.002
1
6mer
44687-44707
0.002
5
6mer
34850-34874
0.002
1
6mer
1391-1412
0.002
1
6mer
27530-27553
0.002
0
6mer
8977-9004
0.001
3
6mer
41530-41544
0.001
3
6mer
42773-42792
0.001
4
6mer
33954-33980
0.001
1
6mer
48358-48384
0.001
1
6mer
25384-25402
0.001
4
6mer
44170-44185
0.001
1
6mer
41723-41745
0.001
3
6mer
14212-14232
0.001
1
6mer
31529-31548
0.001
2
6mer
31646-31666
0.001
0
6mer
27510-27532
0.001
1
6mer
25345-25364
0.001
3
6mer
7043-7070
0.001
1
6mer
31521-31547
0.000
1
TRAF3IP2-AS1
hsa-miR-15a-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000438298
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-155
0.061
6
6mer
131-152
0.007
4
RP5-875O13.1
hsa-miR-15a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000614408
Biotype: pseudogene
Gene id: ENSG00000233421
Gene Name: RP5-875O13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
776-795
0.063
1
6mer
779-795
0.004
0
RP11-108M9.3
hsa-miR-15a-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000619677
Biotype: pseudogene
Gene id: ENSG00000228549
Gene Name: RP11-108M9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-53
0.063
1
6mer
34-50
0.004
0
XLOC_008554
hsa-miR-15a-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018782
Biotype: transcript isomorph
Gene id: XLOC_008554
Gene Name: XLOC_008554
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1316-1341
0.040
4
7mer
67-86
0.018
1
7mer
631-642
0.006
1
6mer
600-617
0.004
1
AP003774.6
hsa-miR-15a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
860-884
0.042
2
8mer
841-857
0.024
0
PCAT19
hsa-miR-15a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595063
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-440
0.045
0
6mer
551-567
0.016
1
6mer
369-390
0.005
0
RP6-201G10.2
hsa-miR-15a-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000561973
Biotype: lincRNA
Gene id: ENSG00000260118
Gene Name: RP6-201G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
697-722
0.057
2
6mer
128-149
0.009
1
SMC2-AS1
hsa-miR-15a-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603487
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6707-6730
0.058
1
6mer
5505-5509
0.003
5
6mer
2207-2226
0.002
1
6mer
3308-3325
0.001
1
6mer
2516-2535
0.001
Not Conserved
XLOC_007710
hsa-miR-15a-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
702-724
0.022
0
7mer
650-675
0.017
0
6mer
1875-1892
0.009
0
6mer
573-591
0.009
0
6mer
653-675
0.008
0
RP11-764K9.1
hsa-miR-15a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
702-724
0.022
0
7mer
650-675
0.017
0
6mer
573-591
0.009
0
6mer
1875-1892
0.008
0
6mer
653-675
0.008
0
XLOC_013531
hsa-miR-15a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028172
Biotype: transcript isomorph
Gene id: XLOC_013531
Gene Name: XLOC_013531
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-336
0.040
0
7mer
271-286
0.008
1
6mer
4995-5015
0.005
1
6mer
456-472
0.004
2
6mer
739-765
0.002
1
6mer
2922-2936
0.002
1
6mer
2183-2201
0.002
1
RP11-138I17.1
hsa-miR-15a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505736
Biotype: lincRNA
Gene id: ENSG00000248869
Gene Name: RP11-138I17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
30-41
0.056
0
7mer
884-907
0.007
1
AC022007.5
hsa-miR-15a-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000454232
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-176
0.028
0
6mer
156-176
0.013
0
6mer
493-513
0.012
0
6mer
217-233
0.011
0
STX17-AS1
hsa-miR-15a-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529965
Biotype: antisense
Gene id: ENSG00000255145
Gene Name: STX17-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-126
0.056
2
7mer
463-482
0.004
1
6mer
466-482
0.003
1
RP11-218I7.2
hsa-miR-15a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437881
Biotype: lincRNA
Gene id: ENSG00000228739
Gene Name: RP11-218I7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
155-178
0.063
1
LINC00680
hsa-miR-15a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-366
0.055
0
6mer
1367-1393
0.007
0
6mer
795-809
0.001
Not Conserved
CTD-3239E11.2
hsa-miR-15a-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521203
Biotype: antisense
Gene id: ENSG00000253197
Gene Name: CTD-3239E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
20-35
0.063
5
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