LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
FAM66C
hsa-miR-15a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31-50
0.078
1
RP11-506K6.4
hsa-miR-15a-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607565
Biotype: antisense
Gene id: ENSG00000272320
Gene Name: RP11-506K6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-73
0.052
1
7mer
393-411
0.016
3
7mer
353-375
0.010
2
RP11-431J17.1
hsa-miR-15a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000517407
Biotype: lincRNA
Gene id: ENSG00000253170
Gene Name: RP11-431J17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-85
0.061
2
7mer
62-82
0.016
2
RP11-154H17.1
hsa-miR-15a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413887
Biotype: lincRNA
Gene id: ENSG00000236948
Gene Name: RP11-154H17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23-42
0.077
1
RP11-166D19.1
hsa-miR-15a-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530072
Biotype: sense_overlapping
Gene id: ENSG00000255248
Gene Name: RP11-166D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-565
0.077
7
CTC-529P8.1
hsa-miR-15a-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507318
Biotype: lincRNA
Gene id: ENSG00000250072
Gene Name: CTC-529P8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2978-2996
0.074
2
6mer
102-118
0.002
0
RP11-111A21.1
hsa-miR-15a-5p
0.982
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554328
Biotype: lincRNA
Gene id: ENSG00000258526
Gene Name: RP11-111A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
130-144
0.076
1
PCAT19
hsa-miR-15a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599801
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-550
0.046
0
6mer
661-677
0.015
1
6mer
117-143
0.009
0
6mer
479-500
0.005
0
RP11-379F4.4
hsa-miR-15a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607426
Biotype: antisense
Gene id: ENSG00000240207
Gene Name: RP11-379F4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1964-1980
0.055
1
8mer
839-855
0.019
2
6mer
1263-1278
0.002
0
TRAF3IP2-AS1
hsa-miR-15a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606892
Biotype: antisense
Gene id: ENSG00000231889
Gene Name: TRAF3IP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-62
0.069
6
6mer
38-59
0.006
4
XLOC_003406
hsa-miR-15a-5p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006773
Biotype: transcript isomorph
Gene id: XLOC_003406
Gene Name: XLOC_003406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-57
0.034
1
7mer
1407-1433
0.012
1
7mer
2028-2049
0.010
1
7mer
3431-3456
0.006
0
6mer
652-675
0.005
1
6mer
2640-2655
0.004
1
7mer
3234-3255
0.004
0
XLOC_011952
hsa-miR-15a-5p
0.980
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024668
Biotype: transcript isomorph
Gene id: XLOC_011952
Gene Name: XLOC_011952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
86-105
0.074
4
RP11-805L22.3
hsa-miR-15a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577970
Biotype: lincRNA
Gene id: ENSG00000263567
Gene Name: RP11-805L22.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-72
0.039
0
7mer
52-70
0.035
0
AC006262.4
hsa-miR-15a-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599127
Biotype: lincRNA
Gene id: ENSG00000269729
Gene Name: AC006262.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-25
0.065
0
6mer
176-189
0.008
0
XLOC_007688
hsa-miR-15a-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015809
Biotype: transcript isomorph
Gene id: XLOC_007688
Gene Name: XLOC_007688
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-423
0.072
1
RP11-290L1.3
hsa-miR-15a-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552367
Biotype: antisense
Gene id: ENSG00000257453
Gene Name: RP11-290L1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
323-346
0.010
5
7mer
315-334
0.010
5
7mer
317-343
0.008
7
7mer
315-340
0.008
7
6mer
362-378
0.008
10
7mer
344-364
0.007
3
7mer
315-337
0.006
5
7mer
341-355
0.006
2
7mer
344-358
0.005
2
7mer
344-361
0.004
1
RP11-659P15.1
hsa-miR-15a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526131
Biotype: lincRNA
Gene id: ENSG00000255146
Gene Name: RP11-659P15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-269
0.046
4
8mer
1648-1670
0.021
1
6mer
1651-1670
0.004
2
RP11-212I21.2
hsa-miR-15a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565307
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-302
0.071
4
RP11-73G16.1
hsa-miR-15a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504207
Biotype: retained_intron
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-99
0.067
3
6mer
296-313
0.004
1
RP1-156L9.1
hsa-miR-15a-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419784
Biotype: lincRNA
Gene id: ENSG00000236485
Gene Name: RP1-156L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-79
0.071
0
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