LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
AC006548.28
hsa-miR-15a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
31205-31230
0.018
Not Conserved
9mer
28721-28742
0.012
1
7mer
80918-80923
0.006
Not Conserved
7mer
3842-3855
0.006
1
7mer
25541-25567
0.005
1
7mer
10372-10387
0.004
0
7mer
16692-16715
0.004
1
8mer
37470-37495
0.003
1
7mer
23094-23114
0.003
0
7mer
6725-6743
0.003
0
7mer
67234-67249
0.003
0
7mer
20585-20610
0.003
1
7mer
20470-20496
0.002
1
7mer
2389-2406
0.002
1
6mer
26674-26692
0.002
1
6mer
721-733
0.002
1
6mer
42521-42539
0.002
3
7mer
11915-11932
0.002
0
6mer
63577-63601
0.002
0
7mer
19583-19602
0.002
0
6mer
21488-21502
0.002
1
6mer
34717-34734
0.002
1
7mer
22270-22291
0.001
Not Conserved
6mer
16514-16539
0.001
1
6mer
71614-71630
0.001
Not Conserved
6mer
28070-28090
0.001
1
6mer
12915-12934
0.001
1
6mer
44414-44432
0.001
0
6mer
67740-67757
0.001
Not Conserved
6mer
10625-10638
0.001
1
6mer
39591-39606
0.001
2
6mer
24405-24423
0.001
3
6mer
62982-62997
0.001
1
6mer
51837-51863
0.001
Not Conserved
6mer
12599-12616
0.001
3
6mer
14008-14027
0.001
1
6mer
59237-59263
0.001
1
6mer
7814-7836
0.001
1
6mer
45037-45060
0.001
0
6mer
77165-77185
0.001
0
6mer
17845-17862
0.001
0
6mer
38284-38305
0.001
1
6mer
20436-20450
0.001
4
6mer
54274-54287
0.001
Not Conserved
6mer
24290-24315
0.001
1
6mer
8071-8093
0.001
1
6mer
7935-7957
0.001
1
6mer
62628-62643
0.001
0
6mer
28509-28531
0.001
Not Conserved
7mer
23092-23114
0.001
0
6mer
16424-16441
0.001
1
6mer
38018-38031
0.001
Not Conserved
6mer
13545-13565
0.001
0
6mer
42507-42523
0.001
0
6mer
8588-8607
0.001
1
6mer
12076-12099
0.001
2
RP11-12M5.3
hsa-miR-15a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000415218
Biotype: antisense
Gene id: ENSG00000229407
Gene Name: RP11-12M5.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-30
0.105
3
6mer
463-488
0.005
2
6mer
102-123
0.004
3
6mer
297-316
0.004
2
6mer
162-181
0.003
1
RP11-347J14.7
hsa-miR-15a-5p
0.999
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423499
Biotype: lincRNA
Gene id: ENSG00000231140
Gene Name: RP11-347J14.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-423
0.121
1
CTC-459F4.3
hsa-miR-15a-5p
0.998
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1090-1108
0.025
0
8mer
749-767
0.024
0
6mer
352-373
0.016
0
7mer
749-769
0.011
0
6mer
637-654
0.009
0
6mer
1496-1508
0.008
0
6mer
1339-1360
0.008
0
6mer
698-724
0.007
0
6mer
1565-1578
0.006
0
RP11-379B18.5
hsa-miR-15a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599176
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-382
0.108
3
CTD-2516F10.2
hsa-miR-15a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530846
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
29-53
0.102
4
6mer
510-524
0.005
2
AC006116.15
hsa-miR-15a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593258
Biotype: sense_intronic
Gene id: ENSG00000267429
Gene Name: AC006116.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
808-829
0.091
0
6mer
811-829
0.014
0
KCNQ1OT1
hsa-miR-15a-5p
0.997
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26333-26348
0.015
0
8mer
60173-60188
0.009
0
8mer
78490-78515
0.007
0
8mer
59693-59713
0.006
1
7mer
80243-80258
0.004
1
7mer
42560-42565
0.004
1
7mer
23719-23742
0.003
Not Conserved
7mer
40404-40420
0.003
0
6mer
66037-66060
0.003
4
6mer
52574-52597
0.002
1
6mer
81445-81457
0.002
3
7mer
43621-43631
0.002
1
7mer
31176-31188
0.002
0
6mer
51680-51691
0.002
3
6mer
68731-68748
0.002
0
7mer
3848-3871
0.002
0
6mer
19849-19872
0.002
1
6mer
85154-85169
0.002
4
6mer
61998-62021
0.002
1
6mer
4925-4947
0.002
1
6mer
13281-13293
0.002
1
6mer
3577-3600
0.002
0
6mer
67393-67419
0.002
4
6mer
73679-73704
0.002
1
6mer
81250-81258
0.002
1
6mer
65625-65643
0.001
1
6mer
62750-62766
0.001
3
6mer
62350-62377
0.001
1
6mer
23380-23398
0.001
1
6mer
70826-70852
0.001
1
6mer
63757-63780
0.001
0
6mer
74554-74580
0.001
1
7mer
36773-36791
0.001
0
6mer
36802-36825
0.001
0
7mer
37171-37184
0.001
0
6mer
43267-43287
0.001
1
6mer
85345-85364
0.001
0
6mer
37329-37353
0.001
0
7mer
85047-85067
0.001
1
6mer
61007-61027
0.001
Not Conserved
6mer
37231-37254
0.001
0
6mer
78466-78481
0.001
1
LINC00309
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431020
Biotype: lincRNA
Gene id: ENSG00000230923
Gene Name: LINC00309
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-200
0.057
2
9mer
1736-1753
0.027
5
8mer
1923-1935
0.008
4
7mer
2992-3011
0.006
0
6mer
1926-1951
0.002
4
7mer
2073-2090
0.001
3
6mer
2075-2090
0.001
1
XLOC_002123
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002666
Biotype: transcript isomorph
Gene id: XLOC_002123
Gene Name: XLOC_002123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-197
0.057
2
9mer
1733-1750
0.027
5
8mer
1920-1932
0.008
4
7mer
2989-3008
0.006
0
6mer
1923-1948
0.002
4
7mer
2070-2087
0.001
3
6mer
2072-2087
0.001
1
XLOC_013543
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028193
Biotype: transcript isomorph
Gene id: XLOC_013543
Gene Name: XLOC_013543
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3877-3897
0.024
1
9mer
195-210
0.021
0
8mer
238-263
0.016
0
8mer
3777-3791
0.012
0
8mer
2546-2561
0.005
Not Conserved
8mer
1970-1992
0.004
Not Conserved
7mer
2249-2263
0.004
Not Conserved
8mer
2896-2910
0.004
Not Conserved
8mer
2787-2802
0.004
0
6mer
301-321
0.003
0
8mer
2023-2048
0.002
Not Conserved
6mer
3249-3264
0.002
Not Conserved
7mer
2679-2698
0.001
Not Conserved
6mer
2679-2695
0.001
Not Conserved
XLOC_013174
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-308
0.101
0
RP11-760D2.5
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429367
Biotype: lincRNA
Gene id: ENSG00000233288
Gene Name: RP11-760D2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
864-885
0.097
0
6mer
2211-2235
0.004
Not Conserved
RP11-322E11.2
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000612496
Biotype: lincRNA
Gene id: ENSG00000275512
Gene Name: RP11-322E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
483-498
0.062
0
8mer
2025-2049
0.031
0
8mer+wobble
2077-2093
0.007
0
RP11-361F15.2
hsa-miR-15a-5p
0.996
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443556
Biotype: lincRNA
Gene id: ENSG00000225135
Gene Name: RP11-361F15.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-53
0.099
8
RP11-797H7.5
hsa-miR-15a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340779
Biotype: antisense
Gene id: ENSG00000189316
Gene Name: RP11-797H7.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
917-936
0.085
1
6mer
580-594
0.014
1
CTC-459F4.3
hsa-miR-15a-5p
0.995
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588318
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-257
0.057
0
7mer
239-259
0.028
0
6mer
188-214
0.013
0
XLOC_006792
hsa-miR-15a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014694
Biotype: transcript isomorph
Gene id: XLOC_006792
Gene Name: XLOC_006792
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
324-343
0.094
1
XLOC_008408
hsa-miR-15a-5p
0.994
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018133
Biotype: transcript isomorph
Gene id: XLOC_008408
Gene Name: XLOC_008408
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
284-310
0.094
3
RP3-323A16.1
hsa-miR-15a-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1195-1213
0.012
0
8mer
48992-49008
0.010
1
7mer
45256-45278
0.008
1
7mer
11249-11269
0.007
1
7mer
35762-35786
0.005
2
7mer
11899-11912
0.005
0
7mer
38796-38817
0.005
1
7mer
797-822
0.005
0
7mer
52409-52432
0.004
1
6mer
53582-53606
0.003
0
6mer
37073-37094
0.002
7
6mer
49608-49633
0.002
2
6mer
42126-42147
0.002
1
6mer
47894-47913
0.002
0
7mer
39917-39938
0.002
Not Conserved
6mer
29049-29071
0.002
1
6mer
30304-30329
0.002
1
6mer
44728-44738
0.002
1
6mer
20702-20721
0.002
1
6mer
49396-49423
0.001
Not Conserved
6mer
25654-25671
0.001
1
6mer
52203-52229
0.001
0
6mer
43291-43316
0.001
0
6mer
16947-16969
0.001
3
6mer
5566-5580
0.001
Not Conserved
7mer
35766-35788
0.001
2
6mer
7941-7959
0.001
0
6mer
14370-14385
0.001
0
6mer
34025-34034
0.001
Not Conserved
7mer
34018-34036
0.001
Not Conserved
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