LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
LINC00210
hsa-miR-15a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000431637
Biotype: lincRNA
Gene id: ENSG00000231814
Gene Name: LINC00210
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
999-1016
0.020
2
8mer
118-136
0.015
1
7mer
1092-1114
0.004
1
6mer
118-133
0.004
1
6mer
1133-1151
0.002
3
RP5-940J5.6
hsa-miR-15a-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501075
Biotype: antisense
Gene id: ENSG00000247853
Gene Name: RP5-940J5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
723-744
0.019
13
7mer
723-746
0.013
14
7mer
1410-1428
0.010
1
6mer
902-919
0.002
7
XLOC_000782
hsa-miR-15a-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001452
Biotype: transcript isomorph
Gene id: XLOC_000782
Gene Name: XLOC_000782
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-773
0.025
0
7mer
1570-1588
0.012
0
6mer
1573-1593
0.008
0
CTA-384D8.34
hsa-miR-15a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609268
Biotype: lincRNA
Gene id: ENSG00000273272
Gene Name: CTA-384D8.34
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-208
0.045
1
AC004538.3
hsa-miR-15a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443459
Biotype: retained_intron
Gene id: ENSG00000230333
Gene Name: AC004538.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
461-481
0.033
0
7mer
427-446
0.012
1
RP4-706G24.1
hsa-miR-15a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455902
Biotype: antisense
Gene id: ENSG00000231953
Gene Name: RP4-706G24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-44
0.021
0
7mer
320-337
0.010
1
6mer
47-70
0.006
1
6mer
238-254
0.005
1
6mer
141-159
0.004
Not Conserved
AC022007.5
hsa-miR-15a-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000621000
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-294
0.031
0
6mer
274-294
0.014
0
RP11-129K12.1
hsa-miR-15a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607089
Biotype: lincRNA
Gene id: ENSG00000272334
Gene Name: RP11-129K12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-87
0.029
3
7mer
232-247
0.012
2
6mer
43-68
0.004
1
LINC00663
hsa-miR-15a-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586816
Biotype: lincRNA
Gene id: ENSG00000266904
Gene Name: LINC00663
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-48
0.023
0
7mer
32-48
0.022
0
RP11-137H15.3
hsa-miR-15a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619996
Biotype: lincRNA
Gene id: ENSG00000274546
Gene Name: RP11-137H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
266-290
0.040
0
6mer
976-995
0.005
0
RP3-446N13.1
hsa-miR-15a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000545642
Biotype: lincRNA
Gene id: ENSG00000256342
Gene Name: RP3-446N13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-505
0.045
1
RP11-35J10.7
hsa-miR-15a-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000611809
Biotype: sense_intronic
Gene id: ENSG00000276668
Gene Name: RP11-35J10.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-250
0.045
2
XLOC_011494
hsa-miR-15a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-82
0.045
1
KCNAB1-AS1
hsa-miR-15a-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000467794
Biotype: antisense
Gene id: ENSG00000242370
Gene Name: KCNAB1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
301-317
0.038
3
6mer
411-424
0.007
2
PPP3CB-AS1
hsa-miR-15a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597958
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
722-745
0.023
7
7mer
722-748
0.015
7
6mer
710-730
0.006
6
RP11-335E6.2
hsa-miR-15a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000455038
Biotype: lincRNA
Gene id: ENSG00000203605
Gene Name: RP11-335E6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
780-797
0.045
10
XLOC_012894
hsa-miR-15a-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026576
Biotype: transcript isomorph
Gene id: XLOC_012894
Gene Name: XLOC_012894
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1062-1083
0.040
1
6mer
697-721
0.005
1
MALAT1
hsa-miR-15a-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
157-178
0.021
Not Conserved
7mer
6625-6649
0.010
8
6mer
8157-8177
0.005
6
8mer
719-736
0.004
1
6mer
3896-3917
0.002
5
6mer
5770-5787
0.002
Not Conserved
RP11-124N3.3
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504827
Biotype: lincRNA
Gene id: ENSG00000249174
Gene Name: RP11-124N3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-58
0.044
Not Conserved
XLOC_001417
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004743
Biotype: transcript isomorph
Gene id: XLOC_001417
Gene Name: XLOC_001417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2844-2856
0.044
2
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