LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
AC097467.2
hsa-miR-155-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000596754
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.044
1
6mer
34-53
0.005
1
AC097467.2
hsa-miR-155-5p
0.908
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000615177
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.044
1
6mer
34-53
0.005
1
CTD-2311B13.5
hsa-miR-155-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000613990
Biotype: antisense
Gene id: ENSG00000275563
Gene Name: CTD-2311B13.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
447-463
0.048
1
LINC01213
hsa-miR-155-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000472890
Biotype: lincRNA
Gene id: ENSG00000244541
Gene Name: LINC01213
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
382-409
0.048
1
XLOC_000892
hsa-miR-155-5p
0.907
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000018
Biotype: transcript isomorph
Gene id: XLOC_000892
Gene Name: XLOC_000892
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1414-1426
0.038
4
6mer
127-147
0.006
4
6mer
581-605
0.004
1
CTD-3195I5.1
hsa-miR-155-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571336
Biotype: lincRNA
Gene id: ENSG00000262758
Gene Name: CTD-3195I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-341
0.040
3
6mer
650-654
0.007
4
RP11-598C10.2
hsa-miR-155-5p
0.906
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453639
Biotype: lincRNA
Gene id: ENSG00000223800
Gene Name: RP11-598C10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-81
0.048
0
XLOC_000199
hsa-miR-155-5p
0.905
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1502-1515
0.035
1
6mer
1728-1752
0.013
1
RP11-325D15.2
hsa-miR-155-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000597938
Biotype: antisense
Gene id: ENSG00000269256
Gene Name: RP11-325D15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-501
0.041
1
6mer
352-378
0.006
2
RP11-175O19.4
hsa-miR-155-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421806
Biotype: antisense
Gene id: ENSG00000231025
Gene Name: RP11-175O19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
322-348
0.039
5
6mer
2465-2479
0.005
7
6mer
1998-2020
0.002
2
6mer
2114-2130
0.002
5
RP11-175K6.1
hsa-miR-155-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499583
Biotype: lincRNA
Gene id: ENSG00000245812
Gene Name: RP11-175K6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2422-2444
0.039
0
6mer
2479-2491
0.007
3
6mer
1359-1382
0.002
0
C5orf64
hsa-miR-155-5p
0.904
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1572-1596
0.022
3
6mer
70-94
0.008
3
6mer
2627-2651
0.006
4
6mer
1832-1859
0.006
6
6mer
2590-2612
0.004
Not Conserved
6mer
1625-1645
0.002
6
LINC01473
hsa-miR-155-5p
0.903
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427108
Biotype: lincRNA
Gene id: ENSG00000237877
Gene Name: LINC01473
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
610-628
0.038
3
6mer
620-638
0.010
6
BDNF-AS
hsa-miR-155-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530313
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
403-420
0.047
3
XLOC_012552
hsa-miR-155-5p
0.902
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025731
Biotype: transcript isomorph
Gene id: XLOC_012552
Gene Name: XLOC_012552
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-37
0.047
0
LINC01504
hsa-miR-155-5p
0.901
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000436054
Biotype: lincRNA
Gene id: ENSG00000225434
Gene Name: LINC01504
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1407-1432
0.047
1
PTPRD-AS2
hsa-miR-155-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429581
Biotype: lincRNA
Gene id: ENSG00000226717
Gene Name: PTPRD-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2736-2752
0.045
Not Conserved
6mer
1164-1181
0.002
1
LINC01140
hsa-miR-155-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000484933
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3067-3082
0.043
10
6mer
1091-1110
0.003
4
C5orf64
hsa-miR-155-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1647-1671
0.022
3
6mer
145-169
0.008
3
6mer
2702-2726
0.006
4
6mer
1907-1934
0.006
6
6mer
2665-2687
0.003
Not Conserved
6mer
1700-1720
0.002
6
ZRANB2-AS2
hsa-miR-155-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000585415
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
744-769
0.046
1
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