LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
LINC01140
hsa-miR-155-5p
0.928
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2880-2895
0.045
10
6mer
904-923
0.004
4
6mer
433-458
0.003
Not Conserved
LOC102659288
hsa-miR-155-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
480-506
0.025
9
7mer
1066-1087
0.018
1
6mer
1338-1364
0.006
1
6mer
391-412
0.003
2
CASC8
hsa-miR-155-5p
0.927
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502056
Biotype: antisense
Gene id: ENSG00000246228
Gene Name: CASC8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1041-1059
0.049
1
6mer
488-502
0.003
0
XLOC_007438
hsa-miR-155-5p
0.925
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015577
Biotype: transcript isomorph
Gene id: XLOC_007438
Gene Name: XLOC_007438
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
350-357
0.046
2
7mer
1672-1696
0.004
0
6mer
5230-5254
0.002
0
RP11-708H21.4
hsa-miR-155-5p
0.924
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575159
Biotype: lincRNA
Gene id: ENSG00000262973
Gene Name: RP11-708H21.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1122-1147
0.021
0
6mer
47-72
0.021
1
6mer
1169-1192
0.008
0
6mer
805-819
0.002
Not Conserved
AC159540.1
hsa-miR-155-5p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000620023
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-43
0.051
0
AC097467.2
hsa-miR-155-5p
0.922
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000594492
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.047
1
6mer
34-53
0.005
1
AC097467.2
hsa-miR-155-5p
0.921
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000600928
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
218-245
0.046
1
6mer
25-44
0.005
1
AC097467.2
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616083
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.046
1
6mer
34-53
0.005
1
RP11-167H9.6
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110167.1
Biotype: lincRNA
Gene id: NR_110167.1 (gene)
Gene Name: RP11-167H9.6
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
429-456
0.051
1
LINC00907
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593316
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
666-679
0.051
1
LINC00348
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428761
Biotype: lincRNA
Gene id: ENSG00000226846
Gene Name: LINC00348
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
907-931
0.051
Not Conserved
LINC00635
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608110
Biotype: lincRNA
Gene id: ENSG00000241469
Gene Name: LINC00635
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-127
0.038
4
7mer
125-147
0.012
1
LOC100507443
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_038437.1
Biotype: antisense
Gene id: NR_038437.1 (gene)
Gene Name: LOC100507443
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-207
0.051
1
CTBP1-AS2
hsa-miR-155-5p
0.920
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000578730
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-424
0.048
0
6mer
2109-2127
0.002
0
LINC01410
hsa-miR-155-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424345
Biotype: lincRNA
Gene id: ENSG00000238113
Gene Name: LINC01410
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1233-1253
0.018
0
6mer
2688-2701
0.018
0
6mer
145-163
0.015
0
AC159540.1
hsa-miR-155-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000621982
Biotype: lincRNA
Gene id: ENSG00000230606
Gene Name: AC159540.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-43
0.050
0
RP11-488P3.1
hsa-miR-155-5p
0.919
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433544
Biotype: sense_intronic
Gene id: ENSG00000230439
Gene Name: RP11-488P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
119-141
0.043
1
6mer
849-871
0.004
3
6mer
705-728
0.003
1
LINC00472
hsa-miR-155-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602878
Biotype: lincRNA
Gene id: ENSG00000233237
Gene Name: LINC00472
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-98
0.045
0
6mer
514-535
0.005
3
RP11-221J22.2
hsa-miR-155-5p
0.918
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000483840
Biotype: lincRNA
Gene id: ENSG00000241280
Gene Name: RP11-221J22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1870-1883
0.046
0
6mer
358-383
0.004
2
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