LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-445O3.3
hsa-miR-155-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2718-2736
0.059
0
RP11-142M10.2
hsa-miR-155-5p
0.951
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000446193
Biotype: antisense
Gene id: ENSG00000229751
Gene Name: RP11-142M10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
551-569
0.043
0
7mer
391-416
0.016
2
RP11-734K23.9
hsa-miR-155-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000618066
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
682-704
0.058
0
RP11-554A11.7
hsa-miR-155-5p
0.949
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000567925
Biotype: lincRNA
Gene id: ENSG00000260895
Gene Name: RP11-554A11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
585-606
0.058
Not Conserved
LL22NC03-22D1.1
hsa-miR-155-5p
0.948
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2246-2267
0.021
1
8mer
19244-19262
0.015
3
7mer
7883-7900
0.003
1
6mer
28345-28362
0.003
0
6mer
871-884
0.003
0
6mer
28194-28218
0.003
0
6mer
13342-13362
0.003
7
6mer
14183-14207
0.002
5
6mer
2738-2760
0.002
1
6mer
20318-20332
0.002
1
6mer
24277-24301
0.001
0
6mer
24384-24403
0.001
1
XLOC_013047
hsa-miR-155-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026830
Biotype: transcript isomorph
Gene id: XLOC_013047
Gene Name: XLOC_013047
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2514-2535
0.049
1
6mer
406-428
0.005
1
6mer
420-438
0.004
1
RP11-436H11.5
hsa-miR-155-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507630
Biotype: sense_intronic
Gene id: ENSG00000251456
Gene Name: RP11-436H11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
47-67
0.045
0
7mer
26-41
0.012
1
LARGE-AS1
hsa-miR-155-5p
0.947
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453336
Biotype: antisense
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2020-2037
0.026
1
8mer
1390-1404
0.021
3
6mer
1558-1576
0.010
8
RP11-58B2.1
hsa-miR-155-5p
0.946
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502494
Biotype: antisense
Gene id: ENSG00000249017
Gene Name: RP11-58B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
508-521
0.057
0
LINC01377
hsa-miR-155-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505396
Biotype: lincRNA
Gene id: ENSG00000249808
Gene Name: LINC01377
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
280-304
0.049
1
7mer
227-249
0.008
Not Conserved
AL022344.5
hsa-miR-155-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439913
Biotype: lincRNA
Gene id: ENSG00000234864
Gene Name: AL022344.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3116-3139
0.049
0
7mer
1652-1670
0.005
0
6mer
1971-1988
0.002
1
6mer
1381-1395
0.001
0
RP11-281P23.2
hsa-miR-155-5p
0.944
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515286
Biotype: lincRNA
Gene id: ENSG00000249631
Gene Name: RP11-281P23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
638-663
0.057
1
RP11-295H24.4
hsa-miR-155-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617563
Biotype: lincRNA
Gene id: ENSG00000275580
Gene Name: RP11-295H24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
568-583
0.051
2
6mer
403-430
0.006
1
LINC00476
hsa-miR-155-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429781
Biotype: processed_transcript
Gene id: ENSG00000175611
Gene Name: LINC00476
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
131-155
0.034
0
8mer
296-322
0.017
1
7mer
416-441
0.006
0
LINC01289
hsa-miR-155-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519550
Biotype: lincRNA
Gene id: ENSG00000253734
Gene Name: LINC01289
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3502-3514
0.049
1
7mer
3425-3450
0.008
0
LINC00348
hsa-miR-155-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: NR_047699.1
Biotype: lincRNA
Gene id: NR_047699.1 (gene)
Gene Name: LINC00348
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
802-826
0.057
Not Conserved
SEMA6A-AS1
hsa-miR-155-5p
0.943
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507558
Biotype: antisense
Gene id: ENSG00000248445
Gene Name: SEMA6A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-62
0.036
1
6mer
404-421
0.012
6
7mer
341-359
0.009
0
AC005537.2
hsa-miR-155-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000585996
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
531-551
0.056
1
GNG12-AS1
hsa-miR-155-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434072
Biotype: antisense
Gene id: ENSG00000232284
Gene Name: GNG12-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-174
0.035
6
6mer
440-456
0.014
7
6mer
270-292
0.007
4
RP11-15E1.5
hsa-miR-155-5p
0.941
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000619851
Biotype: lincRNA
Gene id: ENSG00000274893
Gene Name: RP11-15E1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1460-1481
0.034
0
7mer
1874-1895
0.022
0
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