LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
AC010096.1
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000443897
Biotype: lincRNA
Gene id: ENSG00000234597
Gene Name: AC010096.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1636-1661
0.054
5
6mer
1655-1670
0.007
1
6mer
52-65
0.005
1
XLOC_004363
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009935
Biotype: transcript isomorph
Gene id: XLOC_004363
Gene Name: XLOC_004363
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1708-1724
0.014
1
6mer
305-323
0.013
1
6mer
354-380
0.009
1
6mer
1789-1805
0.007
0
6mer
316-343
0.006
0
6mer
1716-1739
0.006
0
6mer
336-361
0.006
0
6mer
744-767
0.005
0
RP11-550I24.2
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494885
Biotype: antisense
Gene id: ENSG00000243176
Gene Name: RP11-550I24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
482-501
0.066
3
TP73-AS1
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452079
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-40
0.060
2
6mer
89-116
0.006
3
AC008067.2
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599412
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
544-564
0.065
9
RP11-521D12.2
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000483023
Biotype: lincRNA
Gene id: ENSG00000244260
Gene Name: RP11-521D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-381
0.065
2
RP11-177H2.2
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522026
Biotype: antisense
Gene id: ENSG00000253695
Gene Name: RP11-177H2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-408
0.065
1
RP11-147L13.15
hsa-miR-155-5p
0.966
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000614046
Biotype: lincRNA
Gene id: ENSG00000274712
Gene Name: RP11-147L13.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1962-1980
0.065
1
AC008067.2
hsa-miR-155-5p
0.964
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595478
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-375
0.064
9
LINC01189
hsa-miR-155-5p
0.963
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000428440
Biotype: lincRNA
Gene id: ENSG00000232827
Gene Name: LINC01189
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1174-1190
0.021
1
6mer
3221-3244
0.018
1
6mer
3087-3100
0.015
1
6mer
2596-2609
0.010
1
RP11-281P23.2
hsa-miR-155-5p
0.962
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514452
Biotype: lincRNA
Gene id: ENSG00000249631
Gene Name: RP11-281P23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-382
0.059
1
6mer
286-305
0.005
1
RP11-661C8.3
hsa-miR-155-5p
0.961
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511936
Biotype: lincRNA
Gene id: ENSG00000250173
Gene Name: RP11-661C8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-414
0.048
5
6mer
388-404
0.009
2
6mer
150-171
0.006
1
ZRANB2-AS2
hsa-miR-155-5p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000623721
Biotype: antisense
Gene id: ENSG00000229956
Gene Name: ZRANB2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1113
0.049
1
7mer
587-607
0.014
1
RP11-661D19.3
hsa-miR-155-5p
0.959
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000559675
Biotype: lincRNA
Gene id: ENSG00000259508
Gene Name: RP11-661D19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-555
0.062
5
RP11-80H5.9
hsa-miR-155-5p
0.958
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000449882
Biotype: lincRNA
Gene id: ENSG00000235100
Gene Name: RP11-80H5.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
723-747
0.035
0
8mer
410-424
0.027
2
XLOC_002770
hsa-miR-155-5p
0.956
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006165
Biotype: transcript isomorph
Gene id: XLOC_002770
Gene Name: XLOC_002770
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
901-928
0.052
0
6mer
584-609
0.009
8
RP11-380B4.3
hsa-miR-155-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000617901
Biotype: lincRNA
Gene id: ENSG00000277151
Gene Name: RP11-380B4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-44
0.024
1
9mer
310-329
0.022
0
6mer
245-261
0.007
1
6mer
4914-4918
0.003
0
6mer
1397-1414
0.002
1
6mer
2089-2109
0.002
1
RP11-746B8.1
hsa-miR-155-5p
0.955
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580366
Biotype: antisense
Gene id: ENSG00000263765
Gene Name: RP11-746B8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-249
0.029
4
7mer
302-328
0.019
6
6mer
283-309
0.013
10
LINC00278
hsa-miR-155-5p
0.954
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000444263
Biotype: lincRNA
Gene id: ENSG00000231535
Gene Name: LINC00278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
541-556
0.051
5
6mer
433-449
0.010
4
RP11-734K23.9
hsa-miR-155-5p
0.953
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000621110
Biotype: lincRNA
Gene id: ENSG00000277701
Gene Name: RP11-734K23.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-734
0.060
0
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