LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
TP73-AS1
hsa-miR-155-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033709.1
Biotype: antisense
Gene id: NR_033709.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-40
0.065
2
6mer
89-116
0.007
3
TP73-AS1
hsa-miR-155-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418088
Biotype: antisense
Gene id: ENSG00000227372
Gene Name: TP73-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-40
0.065
2
6mer
89-116
0.007
3
CTB-176F20.3
hsa-miR-155-5p
0.975
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600671
Biotype: antisense
Gene id: ENSG00000267934
Gene Name: CTB-176F20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5050-5070
0.066
1
6mer
4191-4210
0.004
0
6mer
3495-3521
0.001
Not Conserved
CTD-2316B1.1
hsa-miR-155-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504287
Biotype: lincRNA
Gene id: ENSG00000249362
Gene Name: CTD-2316B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
564-584
0.066
1
6mer
425-441
0.004
2
AC006548.28
hsa-miR-155-5p
0.974
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44697-44719
0.016
1
8mer
72455-72479
0.007
Not Conserved
7mer
4363-4379
0.005
Not Conserved
7mer
37594-37613
0.004
1
7mer
80549-80554
0.004
0
7mer
43516-43522
0.003
2
8mer
80082-80107
0.003
0
7mer
78877-78904
0.003
0
6mer
21454-21463
0.002
1
6mer
3096-3120
0.002
1
6mer
64516-64539
0.002
0
6mer
72788-72815
0.002
0
6mer
63875-63888
0.002
0
6mer
41082-41107
0.002
1
6mer
47237-47259
0.002
Not Conserved
6mer
9220-9242
0.002
0
6mer
26352-26378
0.001
1
6mer
75896-75921
0.001
0
6mer
44934-44955
0.001
0
6mer
73482-73506
0.001
1
6mer
52652-52678
0.001
Not Conserved
6mer
46141-46166
0.001
Not Conserved
6mer
80100-80123
0.001
Not Conserved
6mer
26161-26180
0.001
Not Conserved
6mer
39328-39342
0.001
1
RP11-382J12.1
hsa-miR-155-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499227
Biotype: antisense
Gene id: ENSG00000246366
Gene Name: RP11-382J12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3681-3708
0.050
1
8mer
2370-2391
0.013
1
6mer
3518-3534
0.006
2
CTC-559E9.6
hsa-miR-155-5p
0.973
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586924
Biotype: retained_intron
Gene id: ENSG00000267419
Gene Name: CTC-559E9.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
406-432
0.069
1
AC008103.4
hsa-miR-155-5p
0.972
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623570
Biotype: sense_intronic
Gene id: ENSG00000279987
Gene Name: AC008103.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-41
0.069
1
RP11-327J17.9
hsa-miR-155-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611343
Biotype: lincRNA
Gene id: ENSG00000277135
Gene Name: RP11-327J17.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-137
0.042
9
8mer
293-312
0.022
2
6mer
718-730
0.005
3
LOC284581
hsa-miR-155-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046097.1
Biotype: lincRNA
Gene id: NR_046097.1 (gene)
Gene Name: LOC284581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-788
0.056
1
6mer
1951-1976
0.012
1
RP11-136K7.1
hsa-miR-155-5p
0.971
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510180
Biotype: lincRNA
Gene id: ENSG00000249981
Gene Name: RP11-136K7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
483-509
0.068
0
TTTY10
hsa-miR-155-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1591-1617
0.051
0
6mer
1047-1063
0.016
0
CTC-459F4.1
hsa-miR-155-5p
0.970
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000562493
Biotype: lincRNA
Gene id: ENSG00000261770
Gene Name: CTC-459F4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
351-374
0.046
0
8mer
141-154
0.018
0
6mer
656-678
0.004
0
RP5-1116H23.5
hsa-miR-155-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617644
Biotype: lincRNA
Gene id: ENSG00000276768
Gene Name: RP5-1116H23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
338-360
0.067
0
AP000462.1
hsa-miR-155-5p
0.969
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540545
Biotype: antisense
Gene id: ENSG00000256315
Gene Name: AP000462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-62
0.067
6
RP11-758M4.4
hsa-miR-155-5p
0.968
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523860
Biotype: antisense
Gene id: ENSG00000253706
Gene Name: RP11-758M4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-81
0.066
2
RP11-684B21.1
hsa-miR-155-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560056
Biotype: lincRNA
Gene id: ENSG00000259245
Gene Name: RP11-684B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-439
0.066
5
RP5-1198O20.4
hsa-miR-155-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-750
0.049
1
6mer
734-759
0.017
1
XLOC_011209
hsa-miR-155-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023346
Biotype: transcript isomorph
Gene id: XLOC_011209
Gene Name: XLOC_011209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
493-514
0.066
5
TP73-AS1
hsa-miR-155-5p
0.967
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033710.1
Biotype: antisense
Gene id: NR_033710.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-40
0.060
2
6mer
89-116
0.006
3
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