LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
CASC2
hsa-miR-155-5p
0.993
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454781
Biotype: antisense
Gene id: ENSG00000177640
Gene Name: CASC2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1888-1915
0.083
2
7mer
791-806
0.010
1
RP11-265E18.1
hsa-miR-155-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608314
Biotype: lincRNA
Gene id: ENSG00000272905
Gene Name: RP11-265E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-66
0.075
1
8mer
314-339
0.015
0
XLOC_012659
hsa-miR-155-5p
0.992
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026320
Biotype: transcript isomorph
Gene id: XLOC_012659
Gene Name: XLOC_012659
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-247
0.089
1
AC114765.2
hsa-miR-155-5p
0.990
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438633
Biotype: lincRNA
Gene id: ENSG00000235337
Gene Name: AC114765.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-308
0.048
8
7mer
317-331
0.037
7
RP11-154H23.5
hsa-miR-155-5p
0.989
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000615819
Biotype: antisense
Gene id: ENSG00000274387
Gene Name: RP11-154H23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-112
0.084
7
MIR6818
hsa-miR-155-5p
0.988
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-183
0.019
1
7mer
677-693
0.009
4
8mer
44877-44895
0.008
1
7mer
4556-4574
0.007
3
8mer
15133-15145
0.004
2
6mer
783-801
0.004
6
7mer
12130-12154
0.004
1
7mer
2474-2485
0.003
1
7mer
31487-31502
0.003
0
7mer
31457-31475
0.003
2
6mer
17684-17707
0.002
4
6mer
10650-10668
0.002
1
6mer
5376-5385
0.002
2
6mer
15224-15245
0.002
1
6mer
41911-41937
0.002
1
6mer
26424-26449
0.002
1
6mer
14514-14535
0.002
1
6mer
16762-16781
0.001
1
6mer
36068-36082
0.001
0
6mer
21695-21718
0.001
1
6mer
2304-2324
0.001
2
6mer
17617-17633
0.001
1
CTD-2561J22.5
hsa-miR-155-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4274-4289
0.045
1
8mer
556-566
0.022
0
6mer
4349-4368
0.007
1
6mer
1329-1345
0.005
1
7mer
2954-2977
0.003
Not Conserved
XLOC_010695
hsa-miR-155-5p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022087
Biotype: transcript isomorph
Gene id: XLOC_010695
Gene Name: XLOC_010695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
840-862
0.081
14
LINC01392
hsa-miR-155-5p
0.986
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419883
Biotype: lincRNA
Gene id: ENSG00000233607
Gene Name: LINC01392
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-445
0.058
7
6mer
80-94
0.022
15
XIST
hsa-miR-155-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
9891-9914
0.028
1
7mer
15376-15396
0.008
2
7mer
10123-10150
0.008
3
8mer
14651-14677
0.005
2
7mer
5089-5101
0.005
4
7mer
16085-16100
0.003
0
6mer
10797-10810
0.002
6
6mer
9720-9741
0.002
4
6mer
15682-15704
0.002
2
6mer
14687-14711
0.002
1
6mer
10511-10524
0.002
2
6mer
13757-13783
0.002
2
6mer
2516-2540
0.002
1
6mer
13940-13958
0.002
1
6mer
2813-2840
0.002
1
6mer
12517-12542
0.001
0
6mer
12215-12236
0.001
Not Conserved
RP5-940J5.6
hsa-miR-155-5p
0.985
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501075
Biotype: antisense
Gene id: ENSG00000247853
Gene Name: RP5-940J5.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
175-194
0.055
8
7mer
146-167
0.024
8
FLJ42969
hsa-miR-155-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000514926
Biotype: lincRNA
Gene id: ENSG00000248599
Gene Name: FLJ42969
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1899-1906
0.054
0
8mer
1845-1851
0.025
1
RP3-323A16.1
hsa-miR-155-5p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
32341-32362
0.010
1
8mer
34885-34897
0.009
1
7mer
33393-33416
0.007
1
6mer
54010-54031
0.007
1
8mer
21238-21261
0.005
1
6mer
13557-13575
0.004
9
7mer
33861-33881
0.004
0
6mer
37589-37609
0.003
9
7mer
44629-44640
0.003
0
6mer
32321-32331
0.002
2
6mer
20085-20089
0.002
2
6mer
37442-37468
0.002
5
6mer
40870-40887
0.002
1
6mer
26036-26050
0.002
1
6mer
1975-1979
0.002
1
6mer
45415-45441
0.002
2
6mer
25589-25610
0.002
0
6mer
3085-3099
0.002
Not Conserved
6mer
6314-6336
0.002
0
6mer
1448-1474
0.002
Not Conserved
6mer
1547-1564
0.001
8
6mer
29696-29717
0.001
1
6mer
46984-47007
0.001
1
6mer
3951-3977
0.001
1
6mer
2071-2080
0.001
Not Conserved
XLOC_004983
hsa-miR-155-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010462
Biotype: transcript isomorph
Gene id: XLOC_004983
Gene Name: XLOC_004983
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-327
0.077
5
XLOC_007354
hsa-miR-155-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015980
Biotype: transcript isomorph
Gene id: XLOC_007354
Gene Name: XLOC_007354
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1278-1304
0.077
1
AC012368.1
hsa-miR-155-5p
0.983
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423539
Biotype: lincRNA
Gene id: ENSG00000228079
Gene Name: AC012368.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20-40
0.077
3
KB-208E9.1
hsa-miR-155-5p
0.979
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608615
Biotype: lincRNA
Gene id: ENSG00000272733
Gene Name: KB-208E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-40
0.066
1
6mer
658-671
0.008
0
HIF1A-AS2
hsa-miR-155-5p
0.978
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_045406.1
Biotype: antisense
Gene id: NR_045406.1 (gene)
Gene Name: HIF1A-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-223
0.030
4
8mer
228-247
0.023
1
7mer
475-498
0.020
7
XLOC_012526
hsa-miR-155-5p
0.977
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025698
Biotype: transcript isomorph
Gene id: XLOC_012526
Gene Name: XLOC_012526
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-567
0.072
1
TP73-AS1
hsa-miR-155-5p
0.976
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_033712.1
Biotype: antisense
Gene id: NR_033712.1 (gene)
Gene Name: TP73-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-40
0.065
2
6mer
89-116
0.007
3
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