LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-367H1.1
hsa-miR-155-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000608316
Biotype: lincRNA
Gene id: ENSG00000273113
Gene Name: RP11-367H1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-115
0.033
0
6mer
212-231
0.006
1
AC011995.3
hsa-miR-155-5p
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437610
Biotype: lincRNA
Gene id: ENSG00000228391
Gene Name: AC011995.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-65
0.039
2
XLOC_011937
hsa-miR-155-5p
0.851
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024644
Biotype: transcript isomorph
Gene id: XLOC_011937
Gene Name: XLOC_011937
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
101-124
0.022
14
6mer
119-135
0.018
14
RP1-287H17.1
hsa-miR-155-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447557
Biotype: lincRNA
Gene id: ENSG00000236389
Gene Name: RP1-287H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-62
0.039
0
XLOC_013854
hsa-miR-155-5p
0.848
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028963
Biotype: transcript isomorph
Gene id: XLOC_013854
Gene Name: XLOC_013854
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-270
0.039
0
LINC00442
hsa-miR-155-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2013-2036
0.031
0
6mer
1927-1940
0.007
0
RP11-523O18.7
hsa-miR-155-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000430438
Biotype: sense_overlapping
Gene id: ENSG00000241577
Gene Name: RP11-523O18.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-44
0.039
5
CTB-32P11.1
hsa-miR-155-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522426
Biotype: lincRNA
Gene id: ENSG00000253538
Gene Name: CTB-32P11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
274-291
0.039
1
MIR4534
hsa-miR-155-5p
0.847
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623111
Biotype: sense_overlapping
Gene id: ENSG00000279010
Gene Name: MIR4534
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3033-3054
0.013
1
8mer
10871-10893
0.007
1
7mer
5905-5923
0.007
1
7mer
26799-26814
0.004
1
6mer
6655-6676
0.002
3
7mer
32100-32125
0.002
1
6mer
10421-10446
0.001
1
7mer
6479-6496
0.001
1
6mer
15402-15428
0.001
1
6mer
50539-50557
0.001
1
RP11-4B14.3
hsa-miR-155-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482559
Biotype: lincRNA
Gene id: ENSG00000239381
Gene Name: RP11-4B14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
465-484
0.039
2
CTB-51A17.1
hsa-miR-155-5p
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503244
Biotype: antisense
Gene id: ENSG00000251423
Gene Name: CTB-51A17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-72
0.039
2
RP11-462L8.1
hsa-miR-155-5p
0.845
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450890
Biotype: lincRNA
Gene id: ENSG00000229656
Gene Name: RP11-462L8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1009-1031
0.038
1
CTB-83J4.2
hsa-miR-155-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596330
Biotype: lincRNA
Gene id: ENSG00000269271
Gene Name: CTB-83J4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
751-771
0.032
0
6mer
596-621
0.006
0
XLOC_011038
hsa-miR-155-5p
0.843
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022755
Biotype: transcript isomorph
Gene id: XLOC_011038
Gene Name: XLOC_011038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-317
0.038
11
RP11-141A19.2
hsa-miR-155-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000420071
Biotype: antisense
Gene id: ENSG00000230114
Gene Name: RP11-141A19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
535-557
0.038
0
RP1-293L8.2
hsa-miR-155-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000423208
Biotype: lincRNA
Gene id: ENSG00000224506
Gene Name: RP1-293L8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1774-1797
0.018
2
7mer
2899-2916
0.014
0
7mer
703-725
0.006
1
XLOC_011213
hsa-miR-155-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023356
Biotype: transcript isomorph
Gene id: XLOC_011213
Gene Name: XLOC_011213
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
938-960
0.022
0
7mer
2164-2184
0.011
1
6mer
193-211
0.003
Not Conserved
6mer
1484-1501
0.002
1
XLOC_012881
hsa-miR-155-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026561
Biotype: transcript isomorph
Gene id: XLOC_012881
Gene Name: XLOC_012881
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-611
0.038
1
RP11-383J24.6
hsa-miR-155-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000607837
Biotype: lincRNA
Gene id: ENSG00000271975
Gene Name: RP11-383J24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1767-1779
0.022
1
7mer
1492-1507
0.016
1
RP11-430C1.1
hsa-miR-155-5p
0.842
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568279
Biotype: lincRNA
Gene id: ENSG00000261807
Gene Name: RP11-430C1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6190-6211
0.013
0
7mer
377-390
0.012
1
6mer
6109-6125
0.004
0
7mer
2472-2483
0.004
1
6mer
6222-6226
0.003
1
6mer
3273-3296
0.001
1
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