LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-185E12.2
hsa-miR-155-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606528
Biotype: lincRNA
Gene id: ENSG00000272406
Gene Name: RP11-185E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
439-453
0.041
1
AC079117.1
hsa-miR-155-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110284.1
Biotype: antisense
Gene id: NR_110284.1 (gene)
Gene Name: AC079117.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-525
0.032
1
6mer
695-713
0.010
6
LINC00960
hsa-miR-155-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1247-1264
0.025
0
6mer
1798-1825
0.016
1
XLOC_009723
hsa-miR-155-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020391
Biotype: transcript isomorph
Gene id: XLOC_009723
Gene Name: XLOC_009723
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1233-1257
0.038
6
6mer
853-866
0.003
1
XLOC_011289
hsa-miR-155-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023444
Biotype: transcript isomorph
Gene id: XLOC_011289
Gene Name: XLOC_011289
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-262
0.034
0
6mer
213-229
0.007
1
ERVH48-1
hsa-miR-155-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19-43
0.019
0
6mer
2311-2331
0.011
0
6mer
522-540
0.011
0
LINC-PINT
hsa-miR-155-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451786
Biotype: antisense
Gene id: ENSG00000231721
Gene Name: LINC-PINT
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-576
0.033
1
7mer
2353-2378
0.008
8
AC093901.1
hsa-miR-155-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449075
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
201-218
0.016
14
6mer
17-32
0.014
12
6mer
135-161
0.011
12
RP11-43F13.3
hsa-miR-155-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399869
Biotype: antisense
Gene id: ENSG00000215246
Gene Name: RP11-43F13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4-29
0.040
0
TPTEP1
hsa-miR-155-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000585784
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-262
0.040
1
TMEM147-AS1
hsa-miR-155-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588286
Biotype: antisense
Gene id: ENSG00000236144
Gene Name: TMEM147-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-56
0.024
1
7mer
247-270
0.014
1
6mer
2847-2862
0.003
1
DLX6-AS1
hsa-miR-155-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000458352
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
27-46
0.040
2
RP11-397A16.3
hsa-miR-155-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585985
Biotype: lincRNA
Gene id: ENSG00000267172
Gene Name: RP11-397A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1948-1966
0.025
1
6mer
521-534
0.015
1
AC097467.2
hsa-miR-155-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000596165
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
214-241
0.036
1
6mer
21-40
0.004
1
RP11-63M22.2
hsa-miR-155-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569274
Biotype: antisense
Gene id: ENSG00000260465
Gene Name: RP11-63M22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-217
0.022
1
7mer
881-900
0.011
3
7mer
348-359
0.007
0
AC097467.2
hsa-miR-155-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000616339
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
226-253
0.036
1
6mer
33-52
0.005
1
RP11-119K6.6
hsa-miR-155-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000432120
Biotype: sense_overlapping
Gene id: ENSG00000244332
Gene Name: RP11-119K6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
169-190
0.040
1
AC073043.1
hsa-miR-155-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600062
Biotype: retained_intron
Gene id: ENSG00000232732
Gene Name: AC073043.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
754-772
0.030
1
7mer
357-373
0.010
0
LHFPL3-AS2
hsa-miR-155-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_027374.1
Biotype: antisense
Gene id: NR_027374.1 (gene)
Gene Name: LHFPL3-AS2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
132-155
0.026
0
7mer
792-816
0.011
1
6mer
466-486
0.003
Not Conserved
RP5-1039K5.17
hsa-miR-155-5p
0.853
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609976
Biotype: antisense
Gene id: ENSG00000272582
Gene Name: RP5-1039K5.17
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
420-441
0.039
1
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