LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
LINC01301
hsa-miR-155-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000506428
Biotype: lincRNA
Gene id: ENSG00000251396
Gene Name: LINC01301
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
466-490
0.028
0
7mer
1516-1535
0.012
1
6mer
1357-1382
0.003
4
VSTM2A-OT1
hsa-miR-155-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456049
Biotype: sense_overlapping
Gene id: ENSG00000224223
Gene Name: VSTM2A-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
939-961
0.040
0
6mer
1895-1919
0.003
1
HCG11
hsa-miR-155-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000411553
Biotype: lincRNA
Gene id: ENSG00000228223
Gene Name: HCG11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
466-478
0.027
1
7mer
1685-1704
0.016
1
ZNRD1-AS1
hsa-miR-155-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2794-2819
0.013
0
6mer
5-15
0.010
0
6mer
9227-9247
0.009
1
7mer
5483-5499
0.005
0
6mer
4177-4202
0.002
0
6mer
6980-6988
0.002
0
6mer
5121-5132
0.002
0
RP11-770J1.5
hsa-miR-155-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531742
Biotype: antisense
Gene id: ENSG00000254873
Gene Name: RP11-770J1.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1306-1312
0.022
4
6mer
1932-1951
0.007
3
6mer
1722-1747
0.007
4
6mer
1763-1783
0.006
4
RP11-4B14.3
hsa-miR-155-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000481234
Biotype: lincRNA
Gene id: ENSG00000239381
Gene Name: RP11-4B14.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
714-733
0.038
2
6mer
183-201
0.004
1
CTD-2333M24.1
hsa-miR-155-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504244
Biotype: lincRNA
Gene id: ENSG00000249490
Gene Name: CTD-2333M24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
137-160
0.042
1
LINC01004
hsa-miR-155-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_039981.2
Biotype: lincRNA
Gene id: NR_039981.2 (gene)
Gene Name: LINC01004
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
407-426
0.017
1
7mer
172-190
0.012
1
6mer
9150-9172
0.005
2
6mer
6492-6504
0.003
4
6mer
4321-4345
0.002
1
6mer
4685-4700
0.002
4
6mer
7572-7598
0.001
0
AC003984.1
hsa-miR-155-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110080.1
Biotype: lincRNA
Gene id: NR_110080.1 (gene)
Gene Name: AC003984.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-518
0.042
0
RP5-1024G6.8
hsa-miR-155-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602943
Biotype: lincRNA
Gene id: ENSG00000270172
Gene Name: RP5-1024G6.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
760-773
0.042
3
XLOC_009153
hsa-miR-155-5p
0.870
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019319
Biotype: transcript isomorph
Gene id: XLOC_009153
Gene Name: XLOC_009153
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1265-1286
0.042
1
RP11-209D14.4
hsa-miR-155-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583067
Biotype: sense_intronic
Gene id: ENSG00000266126
Gene Name: RP11-209D14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-65
0.033
0
7mer
141-161
0.009
0
CTD-3046C4.1
hsa-miR-155-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521221
Biotype: lincRNA
Gene id: ENSG00000253205
Gene Name: CTD-3046C4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1606-1624
0.042
1
AC004988.1
hsa-miR-155-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415237
Biotype: antisense
Gene id: ENSG00000203446
Gene Name: AC004988.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-158
0.041
3
AC008281.1
hsa-miR-155-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438659
Biotype: lincRNA
Gene id: ENSG00000228909
Gene Name: AC008281.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
426-447
0.041
1
AC011747.4
hsa-miR-155-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454224
Biotype: lincRNA
Gene id: ENSG00000236008
Gene Name: AC011747.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8265-8292
0.025
1
6mer
24-43
0.006
1
8mer
1375-1393
0.004
0
6mer
947-961
0.003
0
6mer
1921-1943
0.002
0
6mer
3937-3963
0.001
2
MGC32805
hsa-miR-155-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000503529
Biotype: antisense
Gene id: ENSG00000250328
Gene Name: MGC32805
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
531-553
0.037
0
6mer
349-373
0.004
1
LINC00375
hsa-miR-155-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000433074
Biotype: lincRNA
Gene id: ENSG00000226370
Gene Name: LINC00375
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-37
0.041
1
AC079117.1
hsa-miR-155-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445178
Biotype: antisense
Gene id: ENSG00000234653
Gene Name: AC079117.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
501-525
0.032
1
6mer
695-713
0.009
6
AC004067.5
hsa-miR-155-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608733
Biotype: antisense
Gene id: ENSG00000273447
Gene Name: AC004067.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-49
0.037
0
6mer
330-352
0.005
0
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