LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
XLOC_011482
hsa-miR-155-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023278
Biotype: transcript isomorph
Gene id: XLOC_011482
Gene Name: XLOC_011482
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4546-4573
0.022
1
7mer
5212-5227
0.012
0
8mer
1063-1081
0.011
1
AC003984.1
hsa-miR-155-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000446000
Biotype: lincRNA
Gene id: ENSG00000235139
Gene Name: AC003984.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-327
0.044
0
CTD-2008A1.3
hsa-miR-155-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611946
Biotype: lincRNA
Gene id: ENSG00000276121
Gene Name: CTD-2008A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-371
0.040
0
6mer
205-224
0.004
0
AC097467.2
hsa-miR-155-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000594666
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.040
1
6mer
34-53
0.005
1
FLJ22763
hsa-miR-155-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000616779
Biotype: lincRNA
Gene id: ENSG00000241224
Gene Name: FLJ22763
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
328-349
0.039
1
6mer
321-339
0.005
1
CH17-140K24.4
hsa-miR-155-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000623995
Biotype: processed_transcript
Gene id: ENSG00000279472
Gene Name: CH17-140K24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
204-226
0.044
3
RP11-519M16.1
hsa-miR-155-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500092
Biotype: lincRNA
Gene id: ENSG00000246876
Gene Name: RP11-519M16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
215-238
0.032
7
7mer
1486-1501
0.012
3
XLOC_003177
hsa-miR-155-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006553
Biotype: transcript isomorph
Gene id: XLOC_003177
Gene Name: XLOC_003177
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
288-313
0.044
1
AC097467.2
hsa-miR-155-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000621683
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.039
1
6mer
34-53
0.005
1
INE1
hsa-miR-155-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456273
Biotype: sense_intronic
Gene id: ENSG00000224975
Gene Name: INE1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-619
0.044
4
RP11-502M1.2
hsa-miR-155-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512652
Biotype: lincRNA
Gene id: ENSG00000249425
Gene Name: RP11-502M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
828-852
0.029
1
7mer
377-395
0.011
0
6mer
421-443
0.003
1
LINC00856
hsa-miR-155-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421324
Biotype: lincRNA
Gene id: ENSG00000230417
Gene Name: LINC00856
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
336-362
0.026
1
7mer
354-376
0.018
1
INE1
hsa-miR-155-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: NR_024616.1
Biotype: sense
Gene id: NR_024616.1 (gene)
Gene Name: INE1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
671-692
0.044
4
RP11-244H18.1
hsa-miR-155-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000621705
Biotype: antisense
Gene id: ENSG00000276888
Gene Name: RP11-244H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1671-1687
0.037
1
LINC00938
hsa-miR-155-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_028408.1
Biotype: lincRNA
Gene id: NR_028408.1 (gene)
Gene Name: LINC00938
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
51-70
0.040
4
6mer
1673-1689
0.004
1
RNF219-AS1
hsa-miR-155-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607862
Biotype: antisense
Gene id: ENSG00000234377
Gene Name: RNF219-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4631-4655
0.030
4
6mer
5466-5479
0.006
3
6mer
798-824
0.004
4
6mer
3151-3165
0.002
0
6mer
4730-4752
0.001
2
AC097467.2
hsa-miR-155-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000620130
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.039
1
6mer
34-53
0.005
1
LINC00924
hsa-miR-155-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554837
Biotype: lincRNA
Gene id: ENSG00000259134
Gene Name: LINC00924
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
836-859
0.012
6
6mer
437-460
0.011
14
6mer
531-551
0.011
14
6mer
454-480
0.009
12
GABPB1-AS1
hsa-miR-155-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-436
0.020
1
8mer
8008-8032
0.013
2
6mer
494-503
0.003
1
6mer
7864-7880
0.002
3
6mer
4441-4458
0.002
1
6mer
14226-14240
0.002
1
6mer
5823-5845
0.001
1
LINC-PINT
hsa-miR-155-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_015431.1
Biotype: lincRNA
Gene id: NR_015431.1 (gene)
Gene Name: LINC-PINT
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-583
0.032
1
7mer
2236-2261
0.011
8
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