LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001401
hsa-miR-155-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1961-1988
0.046
0
RP11-44F21.5
hsa-miR-155-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567197
Biotype: lincRNA
Gene id: ENSG00000260265
Gene Name: RP11-44F21.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-552
0.046
1
XLOC_009194
hsa-miR-155-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019370
Biotype: transcript isomorph
Gene id: XLOC_009194
Gene Name: XLOC_009194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
249-266
0.046
1
RP11-894P9.1
hsa-miR-155-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000498989
Biotype: antisense
Gene id: ENSG00000246451
Gene Name: RP11-894P9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
298-314
0.046
1
RP11-109I13.2
hsa-miR-155-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601195
Biotype: retained_intron
Gene id: ENSG00000235020
Gene Name: RP11-109I13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
582-600
0.046
1
RP11-58B2.1
hsa-miR-155-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000509656
Biotype: antisense
Gene id: ENSG00000249017
Gene Name: RP11-58B2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
286-299
0.046
0
RP11-567M16.5
hsa-miR-155-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000587315
Biotype: antisense
Gene id: ENSG00000266901
Gene Name: RP11-567M16.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11-33
0.046
1
XLOC_008106
hsa-miR-155-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017284
Biotype: transcript isomorph
Gene id: XLOC_008106
Gene Name: XLOC_008106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1405-1425
0.045
1
AC097467.2
hsa-miR-155-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000618537
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.041
1
6mer
34-53
0.004
1
RP11-221J22.1
hsa-miR-155-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000465215
Biotype: lincRNA
Gene id: ENSG00000214407
Gene Name: RP11-221J22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2033-2046
0.042
0
6mer
521-546
0.004
2
LINC00619
hsa-miR-155-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000374432
Biotype: lincRNA
Gene id: ENSG00000204187
Gene Name: LINC00619
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1027-1050
0.045
1
XLOC_008910
hsa-miR-155-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00019001
Biotype: transcript isomorph
Gene id: XLOC_008910
Gene Name: XLOC_008910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-371
0.024
0
6mer
171-187
0.021
1
AC097467.2
hsa-miR-155-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000597831
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.041
1
6mer
34-53
0.004
1
AC097467.2
hsa-miR-155-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000598890
Biotype: antisense
Gene id: ENSG00000250910
Gene Name: AC097467.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
227-254
0.040
1
6mer
34-53
0.005
1
MALAT1
hsa-miR-155-5p
0.890
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000610481
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
142-159
0.045
1
CTD-2287O16.5
hsa-miR-155-5p
0.889
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606662
Biotype: antisense
Gene id: ENSG00000271918
Gene Name: CTD-2287O16.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-65
0.034
Not Conserved
6mer
21-33
0.010
5
RP1-20N2.8
hsa-miR-155-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000591892
Biotype: processed_transcript
Gene id: ENSG00000278206
Gene Name: RP1-20N2.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2045-2065
0.039
5
6mer
1615-1641
0.005
5
LINC00664
hsa-miR-155-5p
0.888
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
921-940
0.037
1
6mer
820-845
0.007
1
XLOC_000610
hsa-miR-155-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000416
Biotype: transcript isomorph
Gene id: XLOC_000610
Gene Name: XLOC_000610
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-200
0.044
1
RP11-871F6.3
hsa-miR-155-5p
0.887
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540399
Biotype: lincRNA
Gene id: ENSG00000256994
Gene Name: RP11-871F6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-366
0.044
1
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