LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LINC00910
hsa-miR-149-3p
0.964
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592135
Biotype: lincRNA
Gene id: ENSG00000188825
Gene Name: LINC00910
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
295-316
0.054
1
6mer
144-158
0.005
0
6mer
1279-1297
0.002
1
6mer
1111-1127
0.002
1
6mer
1900-1926
0.002
1
AC138035.2
hsa-miR-149-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18-34
0.019
1
6mer
743-765
0.013
1
6mer
351-373
0.013
1
6mer
733-752
0.012
1
6mer
646-673
0.005
0
6mer
908-925
0.002
Not Conserved
RP11-656D10.3
hsa-miR-149-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450713
Biotype: antisense
Gene id: ENSG00000238287
Gene Name: RP11-656D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
450-470
0.064
1
RP11-1084I9.1
hsa-miR-149-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000383019
Biotype: lincRNA
Gene id: ENSG00000206187
Gene Name: RP11-1084I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1646-1664
0.037
1
7mer
1817-1836
0.014
1
6mer
35-56
0.006
1
6mer
1646-1661
0.003
1
6mer
937-962
0.001
2
6mer
1103-1124
0.001
1
6mer
1257-1282
0.001
1
XLOC_001406
hsa-miR-149-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003616
Biotype: transcript isomorph
Gene id: XLOC_001406
Gene Name: XLOC_001406
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1459-1481
0.019
0
7mer
134-158
0.011
Not Conserved
8mer
57-74
0.006
0
9mer
114-134
0.005
0
7mer
355-382
0.004
1
6mer
307-326
0.003
0
8mer
49-71
0.002
0
6mer
36-55
0.002
Not Conserved
7mer
289-302
0.002
0
6mer
713-727
0.002
1
8mer
3167-3189
0.002
1
6mer
5-29
0.002
0
6mer
116-130
0.001
1
6mer
47-63
0.001
Not Conserved
6mer
2606-2624
0.001
0
RP11-757G1.6
hsa-miR-149-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2884-2903
0.043
0
6mer
181-201
0.015
0
6mer
1592-1611
0.006
0
RP11-70F11.11
hsa-miR-149-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550636
Biotype: lincRNA
Gene id: ENSG00000258135
Gene Name: RP11-70F11.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-67
0.046
2
7mer
1320-1343
0.009
1
7mer
1116-1132
0.005
3
6mer
662-685
0.002
1
6mer
1310-1331
0.000
1
XLOC_013601
hsa-miR-149-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028261
Biotype: transcript isomorph
Gene id: XLOC_013601
Gene Name: XLOC_013601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
169-187
0.015
2
8mer
9839-9865
0.011
1
9mer
8238-8260
0.008
0
7mer
9423-9440
0.004
1
6mer
10189-10203
0.003
1
7mer
4765-4787
0.003
1
8mer
9049-9075
0.002
1
7mer
481-495
0.002
0
7mer
6447-6471
0.002
0
8mer
5958-5977
0.002
Not Conserved
8mer
6959-6980
0.002
0
6mer
281-302
0.002
1
6mer
1953-1969
0.001
1
9mer
1961-1979
0.001
1
8mer
1961-1975
0.001
1
6mer
7655-7677
0.001
0
6mer
8991-9014
0.001
2
6mer
8485-8501
0.001
2
6mer
7161-7174
0.001
1
6mer
5191-5211
0.000
Not Conserved
8mer
6972-6991
0.000
0
6mer
9048-9072
0.000
1
XLOC_002220
hsa-miR-149-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004346
Biotype: transcript isomorph
Gene id: XLOC_002220
Gene Name: XLOC_002220
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
295-314
0.014
1
6mer
97-116
0.013
1
6mer
200-219
0.013
1
6mer
356-381
0.008
0
PWRN1
hsa-miR-149-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000569908
Biotype: lincRNA
Gene id: ENSG00000259905
Gene Name: PWRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1112-1128
0.063
1
LINC00479
hsa-miR-149-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000457881
Biotype: lincRNA
Gene id: ENSG00000236384
Gene Name: LINC00479
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
45-57
0.030
0
9mer
90-115
0.013
1
7mer
208-228
0.010
1
6mer
440-460
0.007
2
6mer
94-115
0.003
1
RP11-58K22.1
hsa-miR-149-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528183
Biotype: lincRNA
Gene id: ENSG00000255451
Gene Name: RP11-58K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
65-91
0.063
2
RASAL2-AS1
hsa-miR-149-3p
0.960
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000421505
Biotype: lincRNA
Gene id: ENSG00000224687
Gene Name: RASAL2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-348
0.029
0
8mer
277-303
0.020
Not Conserved
7mer
1951-1969
0.010
1
6mer
1307-1323
0.002
2
6mer
1563-1575
0.002
0
RP5-1057I20.2
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550720
Biotype: lincRNA
Gene id: ENSG00000257488
Gene Name: RP5-1057I20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-132
0.062
1
AC007389.3
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420724
Biotype: lincRNA
Gene id: ENSG00000235725
Gene Name: AC007389.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
45-66
0.035
1
8mer
262-284
0.016
1
6mer
1381-1397
0.003
0
6mer
1087-1104
0.002
Not Conserved
7mer
993-1013
0.002
Not Conserved
6mer
1547-1562
0.001
0
6mer
830-845
0.001
Not Conserved
6mer
1052-1065
0.001
Not Conserved
6mer
727-742
0.001
Not Conserved
HOXB-AS1
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000504972
Biotype: antisense
Gene id: ENSG00000230148
Gene Name: HOXB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
610-636
0.062
2
RP11-43F13.3
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000399869
Biotype: antisense
Gene id: ENSG00000215246
Gene Name: RP11-43F13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
647-664
0.025
0
9mer
709-722
0.018
0
8mer
651-670
0.006
0
7mer
713-734
0.006
Not Conserved
7mer
2408-2427
0.002
1
6mer
2060-2076
0.002
1
6mer
2194-2217
0.001
1
6mer
2227-2252
0.001
Not Conserved
6mer
1927-1943
0.001
0
XLOC_004270
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009857
Biotype: transcript isomorph
Gene id: XLOC_004270
Gene Name: XLOC_004270
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-371
0.049
1
8mer
2374-2397
0.013
1
XLOC_013732
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028662
Biotype: transcript isomorph
Gene id: XLOC_013732
Gene Name: XLOC_013732
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
151-165
0.055
0
6mer
8-28
0.005
2
6mer
716-732
0.001
0
6mer
884-902
0.001
0
LOC388692
hsa-miR-149-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027002.1
Biotype: lincRNA
Gene id: NR_027002.1 (gene)
Gene Name: LOC388692
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11788-11809
0.015
1
7mer
12136-12150
0.013
1
8mer
12136-12156
0.009
1
6mer
12181-12198
0.006
1
7mer
11442-11464
0.003
0
8mer
8753-8770
0.003
1
7mer
7328-7352
0.002
0
7mer
7392-7415
0.002
0
7mer
8665-8689
0.002
1
7mer
7073-7095
0.002
1
6mer
10798-10823
0.002
2
6mer
4193-4219
0.001
0
6mer
10220-10245
0.001
0
6mer
9909-9933
0.001
0
6mer
9522-9541
0.001
1
6mer
8741-8767
0.001
1
6mer
9529-9550
0.000
1
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