LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
RP11-114H20.1
hsa-miR-149-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1242-1266
0.038
0
7mer
1927-1950
0.016
3
7mer
437-452
0.004
0
6mer
2288-2314
0.004
1
6mer
623-640
0.003
1
7mer
1575-1594
0.002
1
6mer
1616-1637
0.001
0
LOC148696
hsa-miR-149-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_026817.1
Biotype: lincRNA
Gene id: NR_026817.1 (gene)
Gene Name: LOC148696
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3623-3647
0.010
3
7mer
3553-3577
0.010
5
8mer
620-642
0.009
2
7mer
892-912
0.006
6
7mer
3324-3339
0.006
2
8mer
1004-1020
0.005
1
7mer
3357-3380
0.005
3
6mer
3073-3099
0.004
5
7mer
3618-3644
0.003
3
6mer
4149-4163
0.003
1
7mer
1939-1961
0.002
0
6mer
3728-3745
0.002
1
6mer
1410-1429
0.001
3
6mer
1651-1675
0.001
1
DSCAM-AS1
hsa-miR-149-3p
0.971
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000422749
Biotype: antisense
Gene id: ENSG00000235123
Gene Name: DSCAM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-838
0.063
1
6mer
230-244
0.005
1
SMG7-AS1
hsa-miR-149-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624060
Biotype: TEC
Gene id: ENSG00000232860
Gene Name: SMG7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1888-1902
0.028
9
7mer
1739-1755
0.017
6
8mer+wobble
1610-1626
0.006
3
7mer
1613-1630
0.005
4
7mer
1256-1282
0.003
2
6mer
1669-1694
0.003
4
6mer
2142-2162
0.003
3
7mer
1032-1052
0.003
1
6mer
1228-1247
0.000
1
DSCAM-AS1
hsa-miR-149-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000444046
Biotype: antisense
Gene id: ENSG00000235123
Gene Name: DSCAM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
793-806
0.063
1
6mer
230-244
0.004
1
DSCAM-AS1
hsa-miR-149-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038899.1
Biotype: antisense
Gene id: NR_038899.1 (gene)
Gene Name: DSCAM-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
824-837
0.062
1
6mer
229-243
0.005
1
RP11-1406H17.1
hsa-miR-149-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000602577
Biotype: lincRNA
Gene id: ENSG00000269908
Gene Name: RP11-1406H17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
363-384
0.068
0
RP11-863P13.3
hsa-miR-149-3p
0.970
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562705
Biotype: lincRNA
Gene id: ENSG00000261327
Gene Name: RP11-863P13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
214-230
0.029
0
8mer
649-663
0.022
0
7mer
241-259
0.008
0
6mer
154-169
0.004
1
7mer
217-235
0.003
0
6mer
273-297
0.002
0
RP11-326C3.12
hsa-miR-149-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534483
Biotype: lincRNA
Gene id: ENSG00000255328
Gene Name: RP11-326C3.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
736-750
0.041
0
7mer
215-232
0.014
1
6mer
254-277
0.004
1
6mer
353-373
0.003
1
6mer
736-759
0.003
0
6mer
720-747
0.002
0
ASH1L-AS1
hsa-miR-149-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027023.1
Biotype: antisense
Gene id: NR_027023.1 (gene)
Gene Name: ASH1L-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
260-282
0.025
4
7mer
25-46
0.022
7
6mer
1683-1703
0.005
0
8mer
16-33
0.005
1
8mer+wobble
1444-1467
0.003
1
6mer
936-957
0.002
6
7mer
1075-1097
0.002
2
6mer
839-858
0.001
3
7mer
1110-1132
0.001
0
XLOC_010768
hsa-miR-149-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022925
Biotype: transcript isomorph
Gene id: XLOC_010768
Gene Name: XLOC_010768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
203-218
0.066
0
RP11-244B22.11
hsa-miR-149-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565523
Biotype: lincRNA
Gene id: ENSG00000261800
Gene Name: RP11-244B22.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
419-433
0.017
0
6mer
345-367
0.016
0
6mer
617-641
0.012
0
6mer
284-302
0.011
0
6mer
426-440
0.010
0
XLOC_004625
hsa-miR-149-3p
0.968
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010162
Biotype: transcript isomorph
Gene id: XLOC_004625
Gene Name: XLOC_004625
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
163-182
0.066
1
CTD-2201E18.3
hsa-miR-149-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000314957
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1010-1035
0.059
1
6mer
2279-2301
0.007
1
XLOC_000682
hsa-miR-149-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000460
Biotype: transcript isomorph
Gene id: XLOC_000682
Gene Name: XLOC_000682
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-285
0.027
6
8mer
1892-1909
0.016
1
8mer+wobble
1327-1351
0.011
1
7mer
1912-1929
0.006
1
7mer
1895-1920
0.004
1
6mer
1059-1079
0.001
1
6mer
1631-1648
0.001
Not Conserved
ARMCX3-AS1
hsa-miR-149-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454228
Biotype: antisense
Gene id: ENSG00000228275
Gene Name: ARMCX3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
55-77
0.042
6
7mer
101-123
0.023
6
LL22NC03-2H8.4
hsa-miR-149-3p
0.966
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000412149
Biotype: lincRNA
Gene id: ENSG00000234630
Gene Name: LL22NC03-2H8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-424
0.065
0
RP11-1006G14.1
hsa-miR-149-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563464
Biotype: lincRNA
Gene id: ENSG00000260672
Gene Name: RP11-1006G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-232
0.021
0
9mer
482-502
0.015
Not Conserved
8mer
1192-1211
0.013
0
6mer
102-128
0.006
0
8mer
2018-2041
0.005
Not Conserved
6mer
210-229
0.003
0
7mer
482-498
0.001
Not Conserved
6mer
2018-2038
0.001
Not Conserved
ZEB2-AS1
hsa-miR-149-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000427278
Biotype: antisense
Gene id: ENSG00000238057
Gene Name: ZEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
820-839
0.024
5
9mer
809-822
0.020
7
7mer
808-818
0.006
7
8mer
843-859
0.006
5
9mer
849-871
0.005
Not Conserved
7mer
843-856
0.002
3
8mer
849-867
0.001
Not Conserved
7mer
887-897
0.001
1
RP11-445O3.3
hsa-miR-149-3p
0.965
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000562127
Biotype: lincRNA
Gene id: ENSG00000260763
Gene Name: RP11-445O3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
761-782
0.042
0
6mer
50-75
0.014
0
6mer
1619-1636
0.004
0
6mer
1786-1804
0.003
0
6mer
1754-1776
0.002
0
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