LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
LINC00442
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
178-203
0.033
0
7mer
289-305
0.020
1
6mer
61-74
0.012
1
6mer
382-409
0.005
0
6mer
568-584
0.002
0
RP11-440G9.1
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027311.1
Biotype: lincRNA
Gene id: NR_027311.1 (gene)
Gene Name: RP11-440G9.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.046
1
8mer
1996-2015
0.011
1
6mer
20-46
0.006
1
7mer
1999-2015
0.005
1
6mer
61-81
0.004
1
XLOC_010288
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
178-203
0.033
0
7mer
289-305
0.020
1
6mer
61-74
0.012
1
6mer
382-409
0.005
0
6mer
568-584
0.002
0
LINC00442
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428086
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
173-198
0.033
0
7mer
284-300
0.020
1
6mer
56-69
0.011
1
6mer
377-404
0.005
0
6mer
563-579
0.002
0
XLOC_004673
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010856
Biotype: transcript isomorph
Gene id: XLOC_004673
Gene Name: XLOC_004673
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-973
0.058
3
7mer
664-678
0.010
1
6mer
646-665
0.002
Not Conserved
6mer
503-522
0.001
0
CHL1-AS2
hsa-miR-149-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451839
Biotype: retained_intron
Gene id: ENSG00000224318
Gene Name: CHL1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
374-395
0.068
5
6mer
426-447
0.003
2
XLOC_001223
hsa-miR-149-3p
0.975
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001838
Biotype: transcript isomorph
Gene id: XLOC_001223
Gene Name: XLOC_001223
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
793-805
0.023
1
6mer
861-871
0.018
1
6mer
1052-1068
0.016
1
6mer
533-543
0.014
1
XLOC_001227
hsa-miR-149-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001840
Biotype: transcript isomorph
Gene id: XLOC_001227
Gene Name: XLOC_001227
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
40-62
0.062
4
6mer
135-157
0.008
3
XLOC_013549
hsa-miR-149-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028198
Biotype: transcript isomorph
Gene id: XLOC_013549
Gene Name: XLOC_013549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-348
0.008
Not Conserved
7mer
415-435
0.004
Not Conserved
7mer
1686-1702
0.004
0
7mer
1494-1510
0.004
0
7mer
1735-1751
0.003
0
6mer
2152-2168
0.003
0
7mer
1530-1555
0.002
0
7mer
520-540
0.002
Not Conserved
7mer
1396-1412
0.002
0
7mer
1301-1317
0.002
Not Conserved
7mer
271-296
0.002
0
6mer
2045-2064
0.002
0
7mer
1833-1849
0.002
Not Conserved
7mer
1108-1124
0.002
0
7mer
1337-1363
0.002
0
7mer
170-189
0.002
Not Conserved
7mer
58-77
0.002
Not Conserved
7mer
1633-1653
0.002
Not Conserved
7mer
1588-1604
0.002
Not Conserved
7mer
820-836
0.002
Not Conserved
7mer
614-640
0.002
Not Conserved
7mer
771-787
0.001
Not Conserved
6mer
116-134
0.001
Not Conserved
7mer
722-738
0.001
Not Conserved
7mer
674-689
0.001
Not Conserved
7mer
951-977
0.001
Not Conserved
7mer
1255-1268
0.001
Not Conserved
7mer
1445-1461
0.001
Not Conserved
7mer
856-882
0.001
Not Conserved
7mer
1008-1026
0.001
Not Conserved
7mer
1055-1075
0.001
Not Conserved
7mer
1144-1170
0.001
Not Conserved
RP11-363G10.2
hsa-miR-149-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1104-1128
0.040
0
7mer
420-443
0.014
2
6mer
56-82
0.005
1
7mer
1918-1933
0.004
0
6mer
1730-1747
0.003
1
7mer
776-795
0.002
1
6mer
733-754
0.002
0
RP11-830F9.6
hsa-miR-149-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000378347
Biotype: antisense
Gene id: ENSG00000205018
Gene Name: RP11-830F9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1614-1632
0.052
0
7mer
1347-1366
0.006
0
7mer
1146-1165
0.005
0
7mer
1414-1433
0.005
0
7mer
742-761
0.002
0
RP11-521D12.2
hsa-miR-149-3p
0.974
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000483023
Biotype: lincRNA
Gene id: ENSG00000244260
Gene Name: RP11-521D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1364-1389
0.063
5
6mer
245-264
0.003
1
6mer
260-277
0.002
0
6mer
596-615
0.001
Not Conserved
RP11-389G6.3
hsa-miR-149-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562191
Biotype: sense_overlapping
Gene id: ENSG00000261292
Gene Name: RP11-389G6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1272-1295
0.069
0
DSCAM-AS1
hsa-miR-149-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455354
Biotype: antisense
Gene id: ENSG00000235123
Gene Name: DSCAM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
922-935
0.065
1
6mer
230-244
0.005
1
XLOC_006513
hsa-miR-149-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013877
Biotype: transcript isomorph
Gene id: XLOC_006513
Gene Name: XLOC_006513
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-213
0.069
0
RP11-196E1.3
hsa-miR-149-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532153
Biotype: antisense
Gene id: ENSG00000254561
Gene Name: RP11-196E1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-270
0.035
0
8mer
1392-1407
0.009
3
6mer
4261-4275
0.005
0
7mer
1142-1160
0.005
2
6mer
3760-3780
0.003
0
7mer
1438-1452
0.003
4
8mer
2650-2671
0.002
1
7mer
2381-2393
0.002
1
6mer
3507-3520
0.001
3
6mer
2990-3006
0.001
2
6mer
2808-2833
0.001
1
6mer
2275-2294
0.001
0
6mer
2845-2865
0.001
1
6mer
1516-1536
0.000
1
XLOC_000964
hsa-miR-149-3p
0.973
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001629
Biotype: transcript isomorph
Gene id: XLOC_000964
Gene Name: XLOC_000964
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1018-1038
0.021
0
9mer
739-756
0.014
1
6mer
163-186
0.014
7
6mer
384-403
0.010
8
9mer
941-961
0.005
0
6mer
2211-2229
0.003
1
6mer
1941-1958
0.002
1
7mer
945-961
0.002
0
DSCAM-AS1
hsa-miR-149-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000427451
Biotype: antisense
Gene id: ENSG00000235123
Gene Name: DSCAM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1280-1293
0.063
1
6mer
230-244
0.005
1
LINC00982
hsa-miR-149-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000453118
Biotype: antisense
Gene id: ENSG00000177133
Gene Name: LINC00982
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-199
0.031
6
8mer
1593-1610
0.016
1
8mer+wobble
1028-1052
0.011
1
7mer
1613-1630
0.006
1
7mer
1596-1621
0.004
1
6mer
1332-1349
0.001
Not Conserved
CTA-342B11.3
hsa-miR-149-3p
0.972
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8690-8715
0.020
0
8mer
11844-11868
0.008
1
8mer
1147-1171
0.006
0
6mer
755-775
0.003
0
6mer
370-386
0.002
0
7mer
14375-14391
0.002
1
6mer
5702-5724
0.002
1
6mer
4691-4705
0.002
1
6mer
13257-13267
0.002
1
6mer
24086-24108
0.002
0
6mer
18751-18768
0.001
1
6mer
22059-22081
0.001
Not Conserved
6mer
10961-10978
0.001
1
6mer
15891-15907
0.001
0
6mer
11105-11127
0.001
1
6mer
15088-15111
0.001
0
6mer
14921-14939
0.001
1
6mer
3715-3730
0.001
1
6mer
4118-4135
0.001
0
6mer
21306-21328
0.001
Not Conserved
6mer
5876-5898
0.001
1
6mer
9938-9954
0.001
0
6mer
10680-10694
0.001
1
6mer
15998-16015
0.001
0
6mer
20592-20612
0.001
Not Conserved
6mer
14456-14480
0.001
1
6mer
21448-21463
0.001
Not Conserved
6mer
14194-14213
0.001
Not Conserved
6mer
22728-22748
0.001
Not Conserved
6mer
3768-3790
0.000
1
6mer
22747-22761
0.000
Not Conserved
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