LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
AC013733.3
hsa-miR-149-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000440371
Biotype: antisense
Gene id: ENSG00000234595
Gene Name: AC013733.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-567
0.036
1
7mer
458-478
0.011
1
9mer
515-531
0.010
0
7mer
481-502
0.010
0
7mer
551-564
0.008
1
XLOC_003483
hsa-miR-149-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008020
Biotype: transcript isomorph
Gene id: XLOC_003483
Gene Name: XLOC_003483
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1075-1098
0.075
Not Conserved
SYS1-DBNDD2
hsa-miR-149-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_003189.2
Biotype: sense
Gene id: NR_003189.2 (gene)
Gene Name: SYS1-DBNDD2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1157-1174
0.060
4
7mer
1057-1074
0.015
4
PAX8-AS1
hsa-miR-149-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11689-11706
0.025
3
9mer
11574-11591
0.010
0
8mer
7989-8009
0.006
1
7mer
801-820
0.006
1
7mer
1361-1379
0.004
0
7mer
8843-8854
0.003
1
8mer
7932-7953
0.003
1
6mer
264-288
0.003
0
6mer
11680-11703
0.002
2
6mer
307-322
0.002
1
6mer
11268-11292
0.002
0
6mer
9717-9732
0.001
0
7mer
6632-6644
0.001
Not Conserved
6mer
450-467
0.001
0
6mer
315-333
0.001
2
6mer
7932-7950
0.001
2
9mer
6633-6648
0.001
Not Conserved
6mer
6429-6447
0.001
0
6mer
957-979
0.001
1
6mer
3474-3497
0.001
0
6mer
4715-4731
0.001
2
RP11-301G19.1
hsa-miR-149-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412872
Biotype: lincRNA
Gene id: ENSG00000227706
Gene Name: RP11-301G19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
504-529
0.057
0
6mer
1269-1290
0.009
0
6mer
367-385
0.009
0
CTD-2201E18.3
hsa-miR-149-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499871
Biotype: sense_overlapping
Gene id: ENSG00000177738
Gene Name: CTD-2201E18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
806-831
0.057
1
6mer
2210-2235
0.008
1
6mer
2075-2097
0.007
1
6mer
2242-2260
0.003
0
CTD-2516F10.4
hsa-miR-149-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530963
Biotype: antisense
Gene id: ENSG00000254864
Gene Name: CTD-2516F10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-115
0.074
1
RP5-908M14.5
hsa-miR-149-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618678
Biotype: antisense
Gene id: ENSG00000233017
Gene Name: RP5-908M14.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-401
0.074
1
RP11-61A14.2
hsa-miR-149-3p
0.979
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561475
Biotype: lincRNA
Gene id: ENSG00000261705
Gene Name: RP11-61A14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-396
0.064
1
6mer
391-409
0.004
1
6mer
70-89
0.003
1
6mer
130-152
0.002
1
RP13-379O24.2
hsa-miR-149-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000569373
Biotype: lincRNA
Gene id: ENSG00000260542
Gene Name: RP13-379O24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-308
0.019
0
8mer
353-377
0.018
1
7mer
58-85
0.013
0
8mer+wobble
141-166
0.007
0
8mer+wobble
1293-1312
0.005
1
8mer
652-678
0.004
0
6mer
682-701
0.004
1
6mer
1934-1958
0.004
1
6mer
1009-1025
0.001
Not Conserved
RP11-720L2.2
hsa-miR-149-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000582120
Biotype: sense_intronic
Gene id: ENSG00000265477
Gene Name: RP11-720L2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
245-263
0.066
1
7mer
255-274
0.006
0
XLOC_005862
hsa-miR-149-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011141
Biotype: transcript isomorph
Gene id: XLOC_005862
Gene Name: XLOC_005862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
58-75
0.046
1
8mer
2215-2234
0.011
1
7mer
2218-2234
0.006
1
6mer
20-46
0.006
1
6mer
61-81
0.004
1
TTTY15
hsa-miR-149-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
79-99
0.052
0
6mer
2402-2414
0.008
0
6mer
1157-1175
0.007
0
6mer
1856-1881
0.006
0
RP11-351J23.2
hsa-miR-149-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000609107
Biotype: lincRNA
Gene id: ENSG00000272549
Gene Name: RP11-351J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
86-112
0.033
1
8mer
258-283
0.019
1
7mer
253-267
0.003
0
6mer
261-283
0.003
1
6mer
90-112
0.003
1
6mer
547-566
0.003
1
7mer
3331-3351
0.002
0
6mer
4307-4324
0.001
0
6mer
3636-3654
0.001
Not Conserved
6mer
1967-1992
0.001
0
7mer
1158-1180
0.001
1
6mer
2782-2803
0.001
0
6mer
2369-2390
0.001
0
LLNLR-304G9.1
hsa-miR-149-3p
0.978
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000619774
Biotype: antisense
Gene id: ENSG00000274447
Gene Name: LLNLR-304G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
337-359
0.059
1
7mer
394-416
0.013
1
LINC00641
hsa-miR-149-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555379
Biotype: retained_intron
Gene id: ENSG00000258441
Gene Name: LINC00641
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4588-4602
0.052
1
9mer
4431-4448
0.019
0
6mer
3860-3876
0.001
1
6mer
1821-1835
0.001
1
TTTY15
hsa-miR-149-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-132
0.051
0
6mer
1190-1208
0.008
0
6mer
2435-2447
0.008
0
6mer
1889-1914
0.006
0
XLOC_008295
hsa-miR-149-3p
0.977
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
112-132
0.051
0
6mer
1190-1208
0.008
0
6mer
2435-2447
0.008
0
6mer
1889-1914
0.006
0
AC092159.2
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000445418
Biotype: antisense
Gene id: ENSG00000233296
Gene Name: AC092159.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1459-1482
0.039
1
9mer
1436-1456
0.020
0
7mer
1103-1120
0.010
0
6mer
52-70
0.002
1
RP11-303E16.6
hsa-miR-149-3p
0.976
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563072
Biotype: antisense
Gene id: ENSG00000261838
Gene Name: RP11-303E16.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
275-298
0.068
1
6mer
23-41
0.004
0
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