LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
AC012531.25
hsa-miR-149-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562848
Biotype: lincRNA
Gene id: ENSG00000260597
Gene Name: AC012531.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1983-1998
0.036
6
7mer
2574-2599
0.035
6
6mer
2363-2388
0.005
4
6mer
1983-1995
0.002
5
6mer
371-391
0.002
0
6mer
2025-2045
0.001
1
AC074183.4
hsa-miR-149-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439105
Biotype: lincRNA
Gene id: ENSG00000232019
Gene Name: AC074183.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-210
0.069
0
6mer
741-761
0.011
0
XLOC_007118
hsa-miR-149-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015037
Biotype: transcript isomorph
Gene id: XLOC_007118
Gene Name: XLOC_007118
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3958-3972
0.010
1
6mer
74-90
0.007
0
6mer
327-340
0.005
0
6mer
4117-4133
0.004
0
6mer
3754-3770
0.004
0
6mer
376-390
0.004
0
6mer
476-493
0.004
0
6mer
3908-3920
0.003
0
6mer
721-744
0.003
0
6mer
1015-1028
0.003
0
7mer
3148-3168
0.003
0
6mer
3605-3631
0.003
0
6mer
868-891
0.003
0
6mer
3462-3484
0.002
0
7mer
3411-3424
0.002
0
6mer
3701-3718
0.002
0
6mer
1840-1854
0.002
0
6mer
3509-3522
0.002
0
6mer
2995-3011
0.002
0
7mer
3099-3118
0.001
0
6mer
1741-1753
0.001
0
6mer
2474-2497
0.001
Not Conserved
7mer
1693-1706
0.001
0
7mer
2734-2761
0.001
0
7mer
1599-1612
0.001
0
6mer
1503-1526
0.001
0
6mer
1454-1467
0.001
0
6mer
2876-2888
0.001
0
6mer
2829-2841
0.001
0
6mer
2782-2800
0.001
0
6mer
3555-3567
0.001
Not Conserved
7mer
1646-1659
0.001
Not Conserved
6mer
2923-2936
0.001
Not Conserved
RP11-374M1.2
hsa-miR-149-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000612999
Biotype: retained_intron
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-447
0.038
1
7mer
747-767
0.029
1
6mer
1159-1176
0.014
1
AC091729.9
hsa-miR-149-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110070.1
Biotype: lincRNA
Gene id: NR_110070.1 (gene)
Gene Name: AC091729.9
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
97-121
0.073
0
6mer
286-296
0.003
0
6mer
1665-1681
0.003
0
XLOC_012097
hsa-miR-149-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025824
Biotype: transcript isomorph
Gene id: XLOC_012097
Gene Name: XLOC_012097
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1220-1241
0.027
2
8mer
240-265
0.024
6
7mer
251-271
0.006
5
7mer
571-597
0.005
8
6mer
113-135
0.004
5
7mer
1083-1107
0.004
Not Conserved
7mer
649-671
0.004
5
7mer
1246-1257
0.003
2
6mer
211-228
0.002
4
6mer
84-107
0.002
4
RP5-991G20.1
hsa-miR-149-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563328
Biotype: antisense
Gene id: ENSG00000259768
Gene Name: RP5-991G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4497-4518
0.073
5
8mer
3293-3310
0.006
0
LOC648987
hsa-miR-149-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034086.1
Biotype: lincRNA
Gene id: NR_034086.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
695-720
0.062
1
6mer
2099-2124
0.008
1
6mer
1964-1986
0.006
1
6mer
2131-2149
0.003
0
CTD-2517M22.9
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000529377
Biotype: antisense
Gene id: ENSG00000255456
Gene Name: CTD-2517M22.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-392
0.078
1
XLOC_001587
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003790
Biotype: transcript isomorph
Gene id: XLOC_001587
Gene Name: XLOC_001587
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
187-212
0.078
0
LL22NC03-86G7.1
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10950-10967
0.004
1
7mer
21073-21099
0.004
0
7mer
14322-14341
0.003
0
7mer
7094-7113
0.003
1
9mer
24088-24108
0.003
1
7mer
10434-10458
0.003
1
7mer
33104-33125
0.002
0
7mer
3802-3814
0.002
1
7mer
9171-9196
0.002
0
6mer
10192-10209
0.002
2
8mer
20869-20886
0.002
0
7mer
7572-7591
0.002
0
7mer
13907-13926
0.002
0
7mer
1276-1296
0.002
Not Conserved
7mer
20290-20310
0.002
Not Conserved
7mer
23860-23871
0.002
1
6mer
30874-30891
0.001
1
8mer
19470-19488
0.001
1
7mer
15175-15195
0.001
0
6mer
21860-21884
0.001
1
6mer
25683-25699
0.001
2
6mer
22135-22157
0.001
1
6mer
31983-31997
0.001
3
6mer
11086-11103
0.001
0
7mer
20032-20052
0.001
0
6mer
11377-11393
0.001
0
7mer
20229-20252
0.001
0
6mer
34525-34546
0.001
2
6mer
12869-12886
0.001
1
6mer
28384-28406
0.001
1
6mer
4214-4240
0.001
1
6mer
1357-1380
0.001
1
6mer
11815-11825
0.001
1
6mer
26441-26457
0.001
1
7mer
23917-23937
0.001
0
6mer
13604-13622
0.001
0
6mer
14085-14095
0.001
1
6mer
10473-10497
0.001
0
6mer
36436-36446
0.001
0
6mer
34683-34709
0.001
3
6mer
29447-29466
0.001
1
6mer
11649-11667
0.001
1
6mer
18308-18332
0.001
1
6mer
33600-33620
0.001
1
6mer
1377-1393
0.001
1
6mer
33732-33751
0.001
0
6mer
22872-22891
0.001
1
6mer
19463-19485
0.001
1
6mer
35384-35402
0.001
1
6mer
24979-25005
0.001
1
6mer
21284-21308
0.001
0
6mer
30643-30662
0.001
1
6mer
33563-33588
0.001
1
7mer
3892-3911
0.001
0
6mer
4299-4320
0.001
1
6mer
17415-17441
0.000
2
6mer
13935-13957
0.000
0
6mer
7326-7351
0.000
0
6mer
29465-29479
0.000
1
6mer
7386-7406
0.000
1
6mer
8877-8898
0.000
0
7mer
21122-21146
0.000
1
7mer
7494-7514
0.000
1
6mer
30721-30738
0.000
0
6mer
4247-4262
0.000
2
6mer
34773-34791
0.000
1
FLJ13224
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000313737
Biotype: antisense
Gene id: ENSG00000177340
Gene Name: FLJ13224
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1465-1486
0.056
3
7mer
219-240
0.012
3
7mer
140-161
0.004
1
7mer
467-484
0.004
0
7mer
93-114
0.002
0
XLOC_007043
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014557
Biotype: transcript isomorph
Gene id: XLOC_007043
Gene Name: XLOC_007043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1872-1888
0.069
1
6mer
54-72
0.005
1
6mer
83-101
0.004
0
RP11-206L10.3
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4590-4612
0.018
0
6mer
4725-4747
0.013
0
6mer
3990-4004
0.011
0
7mer
371-386
0.008
Not Conserved
6mer
2085-2108
0.007
0
6mer
1814-1832
0.006
0
6mer
2521-2535
0.005
0
6mer
2986-3011
0.004
0
7mer
2816-2834
0.003
Not Conserved
6mer
2489-2505
0.002
0
6mer
249-268
0.002
Not Conserved
GMDS-AS1
hsa-miR-149-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000505870
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7899-7920
0.040
2
6mer
8064-8079
0.013
8
8mer
1421-1441
0.012
1
9mer
5504-5524
0.004
0
6mer
262-280
0.002
Not Conserved
6mer
5453-5469
0.002
1
6mer
6006-6032
0.001
2
6mer
4353-4380
0.001
0
6mer
6293-6313
0.001
1
RP11-519G16.3
hsa-miR-149-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559960
Biotype: antisense
Gene id: ENSG00000259354
Gene Name: RP11-519G16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6-29
0.064
0
6mer
313-338
0.007
1
6mer
114-133
0.004
1
7mer
241-259
0.003
1
XLOC_010979
hsa-miR-149-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022688
Biotype: transcript isomorph
Gene id: XLOC_010979
Gene Name: XLOC_010979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-380
0.077
1
RP11-403I13.7
hsa-miR-149-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424684
Biotype: lincRNA
Gene id: ENSG00000263590
Gene Name: RP11-403I13.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4763-4784
0.017
1
7mer
5111-5125
0.015
1
8mer
5111-5131
0.010
1
7mer
367-390
0.008
0
6mer
5156-5173
0.006
1
7mer
303-327
0.006
0
7mer
4417-4439
0.003
0
8mer
1728-1745
0.003
1
6mer
3773-3798
0.002
2
7mer
1640-1664
0.002
1
6mer
3195-3220
0.001
0
6mer
2884-2908
0.001
0
6mer
2497-2516
0.001
1
6mer
1716-1742
0.001
1
6mer
2504-2525
0.000
1
RP11-327F22.2
hsa-miR-149-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567728
Biotype: antisense
Gene id: ENSG00000261644
Gene Name: RP11-327F22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.042
1
8mer
167-180
0.029
1
6mer
170-180
0.004
1
XLOC_003910
hsa-miR-149-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008451
Biotype: transcript isomorph
Gene id: XLOC_003910
Gene Name: XLOC_003910
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-167
0.058
0
9mer
395-418
0.010
1
7mer
670-684
0.004
0
6mer
284-297
0.003
2
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