LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-149-3p


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Gene
miRNA
Score
DIANA Links
XLOC_013274
hsa-miR-149-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2720-2739
0.033
1
6mer
232-249
0.014
1
6mer
5951-5961
0.011
1
8mer
5446-5465
0.011
0
6mer
3682-3698
0.006
1
7mer
5165-5190
0.005
0
7mer
3096-3122
0.003
Not Conserved
6mer
6447-6462
0.003
0
6mer
4471-4492
0.002
0
XLOC_007849
hsa-miR-149-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016477
Biotype: transcript isomorph
Gene id: XLOC_007849
Gene Name: XLOC_007849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-182
0.041
1
9mer
766-783
0.014
2
8mer
176-198
0.013
0
7mer
250-277
0.005
1
7mer
323-342
0.005
0
6mer
744-762
0.004
2
7mer
770-791
0.004
Not Conserved
6mer
923-941
0.001
0
XLOC_009474
hsa-miR-149-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019666
Biotype: transcript isomorph
Gene id: XLOC_009474
Gene Name: XLOC_009474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
6406-6425
0.044
7
8mer
3666-3678
0.015
6
7mer
2901-2925
0.012
6
6mer
7204-7227
0.004
1
6mer
7197-7208
0.003
2
8mer
5148-5164
0.003
0
6mer
602-625
0.002
0
8mer+wobble
5145-5164
0.002
0
7mer
5568-5584
0.002
0
RP11-586K12.10
hsa-miR-149-3p
0.990
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570183
Biotype: lincRNA
Gene id: ENSG00000260311
Gene Name: RP11-586K12.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1921-1934
0.078
0
7mer
988-1004
0.008
0
XLOC_013744
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028390
Biotype: transcript isomorph
Gene id: XLOC_013744
Gene Name: XLOC_013744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
730-747
0.064
1
7mer
630-651
0.017
0
6mer
401-425
0.003
1
RP11-1437A8.4
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563960
Biotype: lincRNA
Gene id: ENSG00000260827
Gene Name: RP11-1437A8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-566
0.076
0
7mer
1483-1499
0.008
0
AC091729.9
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000413706
Biotype: antisense
Gene id: ENSG00000229043
Gene Name: AC091729.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-112
0.074
0
6mer
612-630
0.006
0
6mer
240-254
0.005
0
RP11-284A20.2
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510242
Biotype: lincRNA
Gene id: ENSG00000249261
Gene Name: RP11-284A20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-128
0.084
1
RP11-750H9.5
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527426
Biotype: antisense
Gene id: ENSG00000255197
Gene Name: RP11-750H9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-239
0.036
0
8mer
292-303
0.021
0
7mer
737-762
0.009
0
6mer
360-381
0.004
1
6mer
346-364
0.004
3
7mer
295-309
0.003
0
7mer
282-299
0.003
1
6mer
760-780
0.003
3
6mer
275-299
0.002
1
XLOC_012488
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025662
Biotype: transcript isomorph
Gene id: XLOC_012488
Gene Name: XLOC_012488
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-27
0.074
1
6mer
852-867
0.004
1
6mer
993-1015
0.004
0
6mer
13-27
0.002
0
XLOC_000340
hsa-miR-149-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001092
Biotype: transcript isomorph
Gene id: XLOC_000340
Gene Name: XLOC_000340
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
302-328
0.069
5
8mer
245-264
0.009
Not Conserved
6mer
622-647
0.002
1
6mer
1183-1205
0.002
2
6mer
1251-1266
0.001
2
RP1-309I22.2
hsa-miR-149-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24802-24815
0.011
1
9mer
22681-22705
0.009
5
8mer
2066-2086
0.007
0
8mer
19373-19383
0.006
1
7mer
25651-25677
0.004
1
9mer
26419-26444
0.004
1
6mer
28336-28359
0.004
2
7mer
19008-19022
0.003
1
8mer
2800-2814
0.003
1
7mer
12563-12575
0.003
1
7mer
4052-4072
0.002
1
7mer
25339-25362
0.002
3
6mer
25562-25578
0.002
4
6mer
3140-3160
0.002
3
6mer
8599-8615
0.002
1
6mer
15033-15046
0.001
3
6mer
6351-6374
0.001
0
7mer
10363-10374
0.001
1
6mer
23491-23502
0.001
3
6mer
26515-26539
0.001
5
6mer
27580-27597
0.001
1
6mer
8266-8282
0.001
1
6mer
8097-8116
0.001
1
7mer
2792-2811
0.001
1
6mer
8726-8743
0.001
2
7mer
26536-26563
0.001
1
6mer
1729-1752
0.001
0
6mer
9113-9126
0.001
0
7mer
6750-6771
0.001
1
6mer
24080-24104
0.001
0
8mer+mismatch
10375-10401
0.001
2
6mer
1287-1306
0.001
Not Conserved
6mer
1341-1359
0.001
2
6mer
1353-1374
0.001
0
6mer
24847-24868
0.000
1
6mer
3275-3292
0.000
0
XLOC_014174
hsa-miR-149-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029531
Biotype: transcript isomorph
Gene id: XLOC_014174
Gene Name: XLOC_014174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
541-559
0.011
Not Conserved
7mer
643-662
0.010
Not Conserved
6mer
867-886
0.006
Not Conserved
6mer
176-195
0.005
Not Conserved
6mer
891-910
0.005
Not Conserved
7mer
415-435
0.005
Not Conserved
6mer
919-937
0.004
Not Conserved
6mer
747-756
0.004
Not Conserved
6mer
816-839
0.004
Not Conserved
6mer
655-674
0.003
Not Conserved
6mer
761-780
0.003
Not Conserved
6mer
716-732
0.003
Not Conserved
6mer
284-308
0.003
Not Conserved
6mer
903-927
0.003
Not Conserved
6mer
298-321
0.003
Not Conserved
6mer
74-83
0.003
Not Conserved
6mer
491-512
0.002
Not Conserved
6mer
504-524
0.002
Not Conserved
6mer
585-594
0.002
Not Conserved
RP11-21A7A.3
hsa-miR-149-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000543817
Biotype: antisense
Gene id: ENSG00000256341
Gene Name: RP11-21A7A.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
279-292
0.060
4
7mer
162-181
0.021
6
6mer
420-438
0.001
1
GATA2-AS1
hsa-miR-149-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473958
Biotype: antisense
Gene id: ENSG00000244300
Gene Name: GATA2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
36-57
0.078
5
6mer
238-261
0.003
4
XLOC_013420
hsa-miR-149-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027431
Biotype: transcript isomorph
Gene id: XLOC_013420
Gene Name: XLOC_013420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
117-141
0.051
0
6mer
19-32
0.016
0
6mer
282-304
0.014
0
CTD-2587H19.3
hsa-miR-149-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597355
Biotype: lincRNA
Gene id: ENSG00000269873
Gene Name: CTD-2587H19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-73
0.072
1
7mer
59-78
0.009
1
GATA2-AS1
hsa-miR-149-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468377
Biotype: antisense
Gene id: ENSG00000244300
Gene Name: GATA2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-82
0.076
5
6mer
263-286
0.003
4
6mer
444-460
0.001
1
RP5-1125A11.7
hsa-miR-149-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618285
Biotype: lincRNA
Gene id: ENSG00000276073
Gene Name: RP5-1125A11.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3287-3305
0.059
3
7mer
3276-3298
0.008
2
7mer
1164-1186
0.006
1
6mer
2369-2389
0.002
1
6mer
362-381
0.002
Not Conserved
6mer
943-962
0.001
1
6mer
915-928
0.001
0
6mer
2064-2084
0.001
1
6mer
1915-1938
0.001
1
XLOC_008507
hsa-miR-149-3p
0.986
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017839
Biotype: transcript isomorph
Gene id: XLOC_008507
Gene Name: XLOC_008507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-149-3p
Sequence: agggagggacgggggcugugc
MirBase ID: MIMAT0004609
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1316-1341
0.076
0
6mer
1316-1337
0.005
0
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